Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00791 ATGGCAGATCTCCCACCTGGTTTTCGATTCTACCCGACAGAGGAAGAGCTCGTTGCCTTCTATCTGCACAACCAGCTCGAGGGACAAAGACACGACACCAGCAGGGTTATTCCAGTCATTGAAATCAATGGCGTAGAGCCTTGGAACCTCCCAAGGGAGCGTTGTCGTGGAGACACGGAGCAATGGTTCTTCTTTTCGCCCAGACAAGAGAGAGAGGAGAGAGGAGGTAGACCCAACAGAACCACCGCAAGTGGGTACTGGAAAGCCACTGGCTCTCCTTGCCATGTTTACTCTTCCGACAACAAAGTCATCGGGATGAAGAAAACCATGGTGTTTTACAAAGGGAAGGCTCCATCCGGAAGGAAAACCAAATGGAAGATGCATGAGTACAAAGCGATTCAACACTCTCACCAATCCAACACAACCCCTCCCAAGTTGAGGCACGAATTCAGCTTGTGTCGTGTTTATGTTATATCGGGAAGCTTTAGATCGTTTGATCGACGACCATTAGAGATTGGAAGAGGTGAGTTAGGAGTTGACGGTGATAGAGGTGGTGGTGCTTCAACAAGTGGTCAAGAGAGAGCAGCAGTGGTGGATGGATCAAGCTCTCCTGATGATACTTGTCACTCTGGTGAAGCTGGAGAAGATTGTAATGCAAGTAATAGGATTGAGGAACCACTCTGGGAATGGGAACACTTAATTGGACATGATGACCCTTATGTCAAGCATGCTTAA 735 0.4816 MADLPPGFRFYPTEEELVAFYLHNQLEGQRHDTSRVIPVIEINGVEPWNLPRERCRGDTEQWFFFSPRQEREERGGRPNRTTASGYWKATGSPCHVYSSDNKVIGMKKTMVFYKGKAPSGRKTKWKMHEYKAIQHSHQSNTTPPKLRHEFSLCRVYVISGSFRSFDRRPLEIGRGELGVDGDRGGGASTSGQERAAVVDGSSSPDDTCHSGEAGEDCNASNRIEEPLWEWEHLIGHDDPYVKHA 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00791 244 Gene3D NAC domain 13 161 IPR036093 GO:0003677|GO:0006355
Vimu4g00791 244 Pfam No apical meristem (NAM) protein 5 131 IPR003441 GO:0003677|GO:0006355
Vimu4g00791 244 MobiDBLite consensus disorder prediction 174 218 - -
Vimu4g00791 244 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 158 - -
Vimu4g00791 244 ProSiteProfiles NAC domain profile. 4 158 IPR003441 GO:0003677|GO:0006355
Vimu4g00791 244 SUPERFAMILY NAC domain 2 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00791 Vimu-Chr4 6236021 6236993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00791 1 233 NAC Transcription Factor Family AT5G22380 54.772 3.69e-83 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu4g00791 NAM 8.2e-34 No_clan