Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00777 ATGCGTACTGTGTGCGGTGATACTGGTAATTGTAAGCTTCAGAGTGATGCTCTAAGGGAAGCTATCACTGGAATCATGGGTGATTCAAAAGAGAAGAACCGGAATTTTGTGGAGACTATTGAACTCCAAATTGGGCTGAAAAACTATGATCCCCAGAAGGACAAGCGTTTCAGTGGCTCTGTTAAGTTGCCCCATATTCCTCGCCCCAAGATGAAGATTTGTATGCTTGGAGATGCCCAACACGTTGAGGAGGCAGAGAAGATAGGATTGGACTACATGGATGTTGAAGCCTTGAAGAAGCTCAACAAAAACAAGAAATTAGTAAAAAAGCTAGCTAAAAAGTATCATGCGTTTTTGGCTTCTGAAGCCGTTATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAGGCAAGTTTTGTTCTTTTTTACTTGCTTTAGCTGATTACGATTTTTTTCCTGGCTTTGCAGGGAAGTTCCCCACACTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTAATGAGACTAAGGCCATGGTCAAATTCCAGCTTAAGAAGGTGCTCTGCATGGGAGTAGCCGTGGGGAATGTCAGCATGGAGGAAAAGCAAATCTTCCAAAATGTACAACTGAGCGTCAACTTCCTCGTGTCATTGCTGAAAAAGAACTGGCAGAATGTTAGGTGCTTGTATCTGAAGAGTACCATGGGGAAGTCATACCGTGTGTTTTAA 738 0.4363 MRTVCGDTGNCKLQSDALREAITGIMGDSKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFCSFLLALADYDFFPGFAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00777 245 Gene3D - 11 128 - -
Vimu4g00777 245 Gene3D - 166 243 - -
Vimu4g00777 245 FunFam Ribosomal protein 166 243 - -
Vimu4g00777 245 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 21 239 - -
Vimu4g00777 245 FunFam Ribosomal protein L10a 10 128 - -
Vimu4g00777 245 CDD Ribosomal_L1 18 244 IPR028364 -
Vimu4g00777 245 PIRSF RPL1p_RPL1a_RPL10e_RPL1o 11 245 IPR002143 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Vimu4g00777 245 Pfam Ribosomal protein L1p/L10e family 31 239 IPR028364 -
Vimu4g00777 245 SUPERFAMILY Ribosomal protein L1 13 245 IPR023674 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00777 Vimu-Chr4 6120690 6122153 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00777 12 245 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 82.479 3.89e-124 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00777 K02865 - gmx:100527698 384.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00777 4 6120690 6122153 Vimu4g00777 4 6120690 6122153 ECH