Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00775 ATGCCAATCCCTTCTGAGAGGCACATGTTCCTTCAAACAGGAAATGGTTCTGGCGATTCTGGACTTGTGCTTTCAACTGATGCTAAGCCAAGATTAAAATGGACAGCAGATCTTCATGCCAGATTTATAGAAGCAGTCAATCAGTTAGGTGGAGCTGACAAAGCAACTCCAAAAACAGTAATGAAACTAATGGGAATTCCAGGGCTTACCTTATATCATTTGAAGAGCCATCTTCAGAAGTATAGATTGAGCAAGAATCTGCATGGACAAAGCAACAACGTGACACAAAAAATGACCATAGAGATGTTATTGATGATTAAAATTACCTTATCAGCAACAAGTGCAGCAACTGGGGAGAGACTTTCTGAAACCAGTTCAACTCACATGAACAAATTAAGCCTTGGACCGCAGGCTAACAAAGATTTGCATATAAGCGAGGCTCTGCAGATGCAGATTGAGGTGCAGAGAAGGCTCAATGAACAACTTGAGGTACAAAGACACTTGCAGCTTAGGATTGAGGCCCAAGGAAAATACCTTCAGTCTGTGTTGGAGAAAGCTCAGGAGACTCTTGGCAGACAAAATTTGGGAATAGTTGGACTTGAAACTGCCAAAGTTCAACTGTCAGAGCTGGTGTCAAAAGTCTCATCTCAGTGCCTTAACTCAGCATTCTCAGAGCTGAAGGAATTACAAGGATTTTGCCCACAGCAAACACACACCAACCAGCCAAACGATTGCTCAGTGGACAGTTGCCTCACATCCTGTGACAGATCACAGAAGGAGCAAGAGATTCAAAATGGCTTTAGACACTTCAACAGCCATATGTTCATGGAACAAAAGGAAGCCACAGAAGCTCCCAACAACCTTAGGAACTGTGAACTCAAGTGGTGTGATGATGGGAAAAAGAACACCTTCCTTGCCCCATTGAGCAGGAATGAAGAAAGAAGAAACTATGCCGCTGAAACCGGTCCTGGCAACTTATCCATGTCCATTGGACTTGAAAGAGAAACAGAAAACAGAAGCAGCATGTATCCTGAAAGGCTAATCACAGAAAACCAATCAGAAGGTGAGTTCCAGCACCGGAACAGAATCAAGACAGAAACAATGAAACCAGTGGATGAAAAAGTTTCTCAAGATTATAGGATGCCAGCTTCTTACTTTGTAGCAGCAAGATTGGACCTAAACAACCATGGAGACAATGAAGCTGCAACCACTTGTAAACAACTGGACTTGAATAGATTCAGTTGGAGCTGA 1251 0.4285 MPIPSERHMFLQTGNGSGDSGLVLSTDAKPRLKWTADLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNNVTQKMTIEMLLMIKITLSATSAATGERLSETSSTHMNKLSLGPQANKDLHISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGIVGLETAKVQLSELVSKVSSQCLNSAFSELKELQGFCPQQTHTNQPNDCSVDSCLTSCDRSQKEQEIQNGFRHFNSHMFMEQKEATEAPNNLRNCELKWCDDGKKNTFLAPLSRNEERRNYAAETGPGNLSMSIGLERETENRSSMYPERLITENQSEGEFQHRNRIKTETMKPVDEKVSQDYRMPASYFVAARLDLNNHGDNEAATTCKQLDLNRFSWS 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00775 416 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 6 296 IPR044848 GO:0003700
Vimu4g00775 416 Coils Coil 145 165 - -
Vimu4g00775 416 Pfam MYB-CC type transfactor, LHEQLE motif 143 189 IPR025756 -
Vimu4g00775 416 NCBIfam myb-like DNA-binding domain, SHAQKYF class 29 84 IPR006447 GO:0003677
Vimu4g00775 416 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 86 IPR017930 -
Vimu4g00775 416 Pfam Myb-like DNA-binding domain 31 82 IPR001005 -
Vimu4g00775 416 Gene3D - 28 86 - -
Vimu4g00775 416 SUPERFAMILY Homeodomain-like 28 84 IPR009057 -
Vimu4g00775 416 FunFam Myb family transcription factor 28 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00775 Vimu-Chr4 6110092 6111824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00775 61 416 G2-like Transcription Factor Family AT3G04030 48.611 1.77e-95 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu4g00775 Myb_DNA-binding 1.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00775 - - pvu:PHAVU_005G123900g 731.865