Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00772 ATGAGACAAGTTTGCTTGGACAACATATTGGCTTCAGAAGAAGATGATAATGGTCTGAGAAAAGTTTGCATGGCGAGCCACAGAATAGGAGAACTCGGTTTGTCTGATTCGGGACCTTCAAGCCACCACATCCCTTATGGAGTGCTTCATGGAATAAACACTACTCCAGTATCAAGCTTAATCAATCAAGGATCTGCTTTTGATTTTGGGGAGCTGGAGGAAGCAATTGTTCTGCATGGAGTCAAGGGTAGAAATGATGATGACAAAGCATCTTTATTCACAGCCAGACCTGCAGCTACACTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAACAAACCCCAAGAGGTGGTTCAAAGTCAGGAGGGGAAAGCACTGATTCAGGTCTTTCCAGCAAAACTGAGCCCCCCTTCGAGGCAGAATCTCCCATGAGTAAAAAGGCATCTTCTTCAGATCACCAGGCTTTTGATCAGCAGCATCTGCAGCACAGACAGCAGCTTCAACAGGATATGGCAAGTGATGCCGCAAGAACAGCCTCTTCACAGAATCAATCAGCAGCCAAATCACAACAAGAAAAGGTCTCTCTCATTCAGGTTTACACCAAAACAATGGATGGTAACGATGCTTTTTGCTACCCATATCATATTGATGATTGCATGACTCTAGAGAAATGGCCCAAGGGGCCTCAGGATTCAGAAATGCTTCCCAGAAGAAAGGGAGCTGGTTCAACATCAGAGAAACCACTTGATGCAAAGACACTAAGACGTTTAGCTCAAAACAGAGAGGCTGCAAGGAAAAGCCGTCTCAGGAAAAAGGCTTACGTGCAGCAGCTAGAATCAAGTAGATTAAAGCTTACCCAGATAGAACAAGAACTCCAAAGAGCACGCTCTCAGGGCTTGTTCGTGGATTGTGGTGGTGTTGGAAGCAATGTAAGCTCTGCGGGAGCCGCAATGTTTGACATGGAATATGGAAGATGGTTAGAAGAAGACCACAGGCTAATGGGGGAGCTTCGGAACGGGTTGCAAGTACCCTTATCAGATAGTGATATGAGAGTGATGGTGGATGGATATCTCTCCCACTATGATGAGATTTTCAGGCTCAAGGGTGTGGCTGCTAAATCAGATGTGTTCCACCTTATCAATGGCATGTGGACTTCCCAAGCTGAACGTTGCTTCCTATGGATTGGTGGTTTTAGACCCTCTGATCTCATCACGATGCTGATACAACAATTGGAGCCACTAGCTGAGCAACAGATAATGGGGATGTATGGCCTGAGACATTCCTCACAGCAAGCAGAAGAAGCACTCTCTCAGGGCCTTGAACAGTTGCAGCAATCTCTGGTGGACACCATTGCTGGAGGCCCAGTTGTTGATGGTGTGCAACAAATGGTCGTTGCCATGAGCAAACTAGCCAATCTTGAAGGATTTGTTCGTCAGGCTGATAATTTGAGGCAACAAACTCTTCATCAGTTATGTCGATTACTCACTGTTCGTCAAGCAGCACGATGCTTCATTGTCATTGGAGAATACTATGGACGTCTTCGAGCCCTTAGTTCTCTCTGGGCATCAAGACCACGAGAGTAA 1584 0.4602 MRQVCLDNILASEEDDNGLRKVCMASHRIGELGLSDSGPSSHHIPYGVLHGINTTPVSSLINQGSAFDFGELEEAIVLHGVKGRNDDDKASLFTARPAATLEMFPSWPMRFQQTPRGGSKSGGESTDSGLSSKTEPPFEAESPMSKKASSSDHQAFDQQHLQHRQQLQQDMASDAARTASSQNQSAAKSQQEKVSLIQVYTKTMDGNDAFCYPYHIDDCMTLEKWPKGPQDSEMLPRRKGAGSTSEKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQIEQELQRARSQGLFVDCGGVGSNVSSAGAAMFDMEYGRWLEEDHRLMGELRNGLQVPLSDSDMRVMVDGYLSHYDEIFRLKGVAAKSDVFHLINGMWTSQAERCFLWIGGFRPSDLITMLIQQLEPLAEQQIMGMYGLRHSSQQAEEALSQGLEQLQQSLVDTIAGGPVVDGVQQMVVAMSKLANLEGFVRQADNLRQQTLHQLCRLLTVRQAARCFIVIGEYYGRLRALSSLWASRPRE 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00772 527 MobiDBLite consensus disorder prediction 112 135 - -
Vimu4g00772 527 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 250 294 IPR004827 GO:0003700|GO:0006355
Vimu4g00772 527 PANTHER TRANSCRIPTION FACTOR TGA9 144 527 - -
Vimu4g00772 527 Gene3D - 251 300 - -
Vimu4g00772 527 MobiDBLite consensus disorder prediction 104 193 - -
Vimu4g00772 527 FunFam BZIP family transcription factor 251 300 - -
Vimu4g00772 527 SMART brlzneu 248 313 IPR004827 GO:0003700|GO:0006355
Vimu4g00772 527 Coils Coil 271 298 - -
Vimu4g00772 527 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 255 270 IPR004827 GO:0003700|GO:0006355
Vimu4g00772 527 ProSiteProfiles DOG1 domain profile. 316 524 IPR025422 GO:0006351|GO:0043565
Vimu4g00772 527 Pfam bZIP transcription factor 251 287 IPR004827 GO:0003700|GO:0006355
Vimu4g00772 527 MobiDBLite consensus disorder prediction 144 193 - -
Vimu4g00772 527 MobiDBLite consensus disorder prediction 228 250 - -
Vimu4g00772 527 Pfam Seed dormancy control 334 408 IPR025422 GO:0006351|GO:0043565
Vimu4g00772 527 CDD bZIP_HBP1b-like 252 302 - -
Vimu4g00772 527 SUPERFAMILY Leucine zipper domain 252 295 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00772 Vimu-Chr4 6077422 6083905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00772 239 527 bZIP Transcription Factor Family AT1G08320 75.172 2.47e-160 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu4g00772 DOG1 5.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00772 K14431 - gmx:100775461 796.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00772 4 6077422 6083905 Vimu4g00772 4 6077422 6083905 ECH