Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00764 ATGAGTTTTAGAGAGTGCAATGTAGAAAACCAGAATCTGTGTCTTCAAACCCCAACTTTCATCGAGTGGCTCAAACCATCTTCTTCTTCTGTAATAAGTTCAATATCATCACCACCTTCTTCCTTACCTTCTTCCTTTGCTCAGCATGATCAACTTTCTCAAGAAACGATCCAGTTTTTTCCCTTCAAGGAAGACCATGAAAAGGATGTTTTAGAAGTGAAAGAAGAGAAGCTGGAACAGGTGACTGTGGCTTTGCACATTGGATTGCCTCACACGGTAGACCCTGAAACTGATAATCATGAAAAGAAGATTATCCATGTAAAGGAAGAAGAACCCTTGAAGAAAAGCTTCCAGGGTTGTTCTTTTAACCAGGAGAGAAGATTTTGGATACCAACTCCTGCACAGATCCTTGTCGGACCGATGCAGTTTGCTTGCTCCATATGCAGCAAAACCTTCAATAGATATAACAATATGCAGATGCATATGTGGGGGCACGGATCCGAATTTAGAAAAGGACCAGACTCACTTAGAGGAACACAACCAGCAGCAATGCTAAGGCTGCCATGTTACTGTTGTGCCCAGGGTTGCAAGAACAACATCAATCATCCAAGAGCCAAGCCCTTGAAGGACTTCAGAACTCTCCAAACCCACTACAAAAGAAAGCATGGTGCAAAACCATTTACGTGCCGAAAGTGTTCAAAATCCTTTGCAGTTAAAGGAGACTGGAGAACTCACGAAAAGAACTGCGGAAAGTTGTGGTATTGCACTTGTGGTTCAGATTTTAAGCACAAAAGATCCCTAAAAGACCATATTAGATCCTTTGGAAAAGGCCACTCTCCACATCCTTCTCATGAAGGCTTCGTTGAGGATGAGAAAGAATGCGTTACTGGATCTGATGAAGATGAAGTTCCTCATACATGA 921 0.4224 MSFRECNVENQNLCLQTPTFIEWLKPSSSSVISSISSPPSSLPSSFAQHDQLSQETIQFFPFKEDHEKDVLEVKEEKLEQVTVALHIGLPHTVDPETDNHEKKIIHVKEEEPLKKSFQGCSFNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFTCRKCSKSFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPHPSHEGFVEDEKECVTGSDEDEVPHT 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00764 306 ProSitePatterns Zinc finger C2H2 type domain signature. 145 165 IPR013087 -
Vimu4g00764 306 Gene3D Classic Zinc Finger 223 285 - -
Vimu4g00764 306 SUPERFAMILY beta-beta-alpha zinc fingers 213 247 IPR036236 -
Vimu4g00764 306 PANTHER ZINC FINGER PROTEIN WIP2 27 292 IPR043584 GO:0003700|GO:0010468
Vimu4g00764 306 FunFam Zinc finger protein WIP2 196 278 - -
Vimu4g00764 306 SUPERFAMILY beta-beta-alpha zinc fingers 112 166 IPR036236 -
Vimu4g00764 306 SMART c2h2final6 143 165 IPR013087 -
Vimu4g00764 306 SMART c2h2final6 190 222 IPR013087 -
Vimu4g00764 306 SMART c2h2final6 227 247 IPR013087 -
Vimu4g00764 306 Gene3D Classic Zinc Finger 142 165 - -
Vimu4g00764 306 MobiDBLite consensus disorder prediction 275 306 - -
Vimu4g00764 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 170 IPR013087 -
Vimu4g00764 306 Pfam C2H2-type zinc finger 143 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00764 Vimu-Chr4 6004722 6007731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00764 9 296 C2H2 Transcription Factor Family AT1G08290 57.658 4.45e-119 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu4g00764 zf-C2H2_6 0.00013 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00764 - - gmx:100819306 515.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00764 4 6004722 6007731 Vimu4g00764 4 6004722 6007731 ECH