Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00763 ATGGCGGAAGAACACCGATGCCAGGCACCACGCTTGTGCGTCAACAATTGCGGTTTCTTTGGCAGCCCTGCCACGCAGAATCTGTGCTCCAAGTGTTACCGCGATTTGCAACTCAATGAGCAGCAATCTTCCAACGCGAAGATGGTTCTGAATCAGTCTCTCGTTCTTCCGGCGCCTCCGGCGCCGGTTTCTGAACCGTCTTCTTCGAAGACGGCGGATCTGGCTTCTGCGGTGGTTGAGGAAGTGCCACGCGCGACGGAAGAGGCTAAGGCGCCGCAGCAGAACCGCTGTATGACGTGTAGGCGGCGCGTGGGGTTGACGGGTTTCAAGTGCCGGTGCGGGATGATGCTTTGCGGGACGCACCGTTACCCGGAGCAGCACGCGTGCGAGTTCGATTTCAAGGGGATGGGGAGGGACCAGATCGCGAAGGCGAATCCGGTGGTGAAGGGCGAGAAGCTCGAGAAGATCTGA 471 0.5924 MAEEHRCQAPRLCVNNCGFFGSPATQNLCSKCYRDLQLNEQQSSNAKMVLNQSLVLPAPPAPVSEPSSSKTADLASAVVEEVPRATEEAKAPQQNRCMTCRRRVGLTGFKCRCGMMLCGTHRYPEQHACEFDFKGMGRDQIAKANPVVKGEKLEKI 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00763 156 SMART AN1_Zf_4 97 134 IPR000058 GO:0008270
Vimu4g00763 156 PANTHER AN1-TYPE ZINC FINGER PROTEIN 9 156 - -
Vimu4g00763 156 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 56 - -
Vimu4g00763 156 Pfam A20-like zinc finger 11 34 IPR002653 GO:0003677|GO:0008270
Vimu4g00763 156 Gene3D - 67 152 IPR035896 -
Vimu4g00763 156 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677|GO:0008270
Vimu4g00763 156 FunFam Zinc finger AN1-type containing 6 69 152 - -
Vimu4g00763 156 ProSiteProfiles Zinc finger AN1-type profile. 91 137 IPR000058 GO:0008270
Vimu4g00763 156 Gene3D - 1 54 - -
Vimu4g00763 156 SUPERFAMILY AN1-like Zinc finger 83 151 IPR035896 -
Vimu4g00763 156 Pfam AN1-like Zinc finger 97 133 IPR000058 GO:0008270
Vimu4g00763 156 SMART A20_3 10 34 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00763 Vimu-Chr4 5997206 5997676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00763 1 156 C2H2 Transcription Factor Family AT3G52800 48.045 1.83e-47 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00763 - - gmx:100807363 275.789