Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00751 ATGTGTTGTGTGATTTTGAATTCAGATATGAAGGTTGTGGGTGCTTATTTGCTTGCAGTTTTGGGAGGGAACCCAACTCCTTCTGCAAGTGATATCAAAAATATCCTTGGCGCAGTTGGAGCTGAAGCTGAGGATGAGTTGATCAACTTGCTCTTGGCTGAAGTTAAGGGCAAAGACTTCAATGAGCTACTTGCCAGCGGAAGGGAAAAGATGTCTGCTGTGTCTGGCGGTGGTGCTGCGGTGGCTGTTGCTGCTGCACCAGCTGCTGGTGGTGGTGGTGCTGCACCTGCCGCAGAAGCAAAGGAAGAAAAGAAAGTTGAAGAGAAGGAGGAGTCCGATGATGATATGGGATTCAGTTTGTTCGACTAA 369 0.4824 MCCVILNSDMKVVGAYLLAVLGGNPTPSASDIKNILGAVGAEAEDELINLLLAEVKGKDFNELLASGREKMSAVSGGGAAVAVAAAPAAGGGGAAPAAEAKEEKKVEEKEESDDDMGFSLFD 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00751 122 Gene3D - 9 68 IPR038716 -
Vimu4g00751 122 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 10 122 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vimu4g00751 122 Pfam 60s Acidic ribosomal protein 27 121 - -
Vimu4g00751 122 Hamap 50S ribosomal protein L12 [rpl12]. 11 122 IPR027534 GO:0003735|GO:0005840|GO:0006414
Vimu4g00751 122 MobiDBLite consensus disorder prediction 89 122 - -
Vimu4g00751 122 CDD Ribosomal_P2 10 122 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vimu4g00751 122 MobiDBLite consensus disorder prediction 98 112 - -
Vimu4g00751 122 FunFam 60S acidic ribosomal protein P2 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00751 Vimu-Chr4 5896564 5899361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00751 10 122 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 61.404 9.52e-27 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00751 K02943 - gmx:100791682 127.102