Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00750 ATGATCGGCCCGGGCCCGGCCCCTCGGGCTCGGCCCAAGCGACCCCTTCAGTTCGAGCAGGCCTACCTCAACGCTTTACCCTCCGCCAACATGTCAGTTTCCGCGCCAATATCGTACGAGAAAAGTTACATGCACCGTGACGTGGTTACGCATGTTGCTGTTTCAGCTGCGGATTTTTTCATCACTGGAAGTTCCGATGGGCATTTGAAGTTTTGGAAGAAAAAGTCTATTGGTATTGAGTTTGCCAAACACTTCAGATCTCATCTTGGTCCAATTGAAGGTCTAGCTGTTAGTATTGATGGTCTGCTCTGCTGCACAATATCAGATGACCGCTCTGTAAAAATATACGATGTAGTCAACTATGACATGATGGTCATGATTCGCTTGCCATATACTCCTGGTGCTGTTGAATGGGTTTACAAACAAGGGGATGTCAAAGCCAGACTTGCTATAAGTGATAGGAACTCATCTTTTGTGCACATATATGATGCACGAGCTGGTTCAAATGATCCCATTGTCTCCAAAGAGATACATATGGGTCCTATCAAAGTTATGAAGTACAACGCCGTGTATGATTCCGTACTCTCAGCAGATGCAAAGGGAATAATTGAATATTGGAGTCCTGTGACACTTCAATTCCCAGAGGATGAGGTCAATTTTAAACTGAAAAGTGATACTGACCTCTTTGAAATTGCAAAATGCAAGACTTCTGTTTCAGCTATTGAGGTAAGTCCAGATGGTAAACAATTTTCCATTACATCACCTGATCGAAGGATCCGTGTGTTTTGGTTCAGAACGGGTAAATTAAGGCGAGTTTATGATGAATCTTTAGAGGTTGCTCAAGATCTCCAAAGAAGTGATGCCCCATTATATCGGTTGGAAGCTATTGATTTTGGTCGAAGAATGGCTGTCGAGAAGGAAATAGAAAAAACAGAAAGTGCACCACTTCCAAATGCAGTCTTTGATGAAAGTTCCAATTTTCTTATATATGCAACCTTGCTTGGGATAAAAATTGTTAATCTGCACACCAATAAAGTTAGTCGAATACTTGGAAAGGTGGAGAATAATGATAGGTTCTTAAGAATAGCTTTATATCAAGGTGATCGGAGTAGCAAAAGAGTAAGAAAGATTCCTTCGGCAGCTGCAAATGTTAATGAGAGTAAGGAGCCTTTGACAGATCCCACTCTCCTGTGTTGTGCCTTTAAAAAGCACAGGATATATTTATTCAGTCGAAGAGAACCGGAGGAGCCTGAAGATGCAACTAAAGGAAGAGATGTGTTCAATGAAAAACCTCCTGCTGATGAACTTTTGGCAGTTTCAGACATTGGAAAGTCAGTTACAACGTCACTTCCTGACAATGTGATTCTACACACCACAATGGGTGATGTTCACATGAAATTATACCCTGAGGAATGTCCAAAAACTGTGGAGAATTTCACAACACACTGCCGAAATGGCTATTATGACAATCTTATTTTTCATAGGGTCATCAAAGGCTTCATGATTCAAACAGGAGATCCTCTGGGAGATGGCACTGGTGGGCAATCTATTTGGGGGAGAGAATTTGAGGATGAATTTCATAAAAGGAAGATAGCTGTGGTGGTTCAAAGTCAGATAGTGACTGGTTCAATGTGTGATAGTTTGATGGCAGACAGTAGCTGGTTGGATGTTTCAAAAGTGGTGCTTCTTAGTTTGGGGAATATGCTAATGCCAAGTGGAAACTTCCTGGGTTTGAGGCATGATAGACCGTTCACAGTTTCTATGGCAAATGCTGGCCCTAATACAAATGGCTCTCAGTTCTTTATCACCACAGTGGCTACTCCATGGTTGGACAACAAGCACACTGTATTTGGTAGAGTTGCAAAGGGAATGGATGTTGTACAGGCCATAGAGAAAGTGAAGACAGACAAGACAGACAAACCATATCAAGATGTTAAAATTCTAAATGTTACTGTACCGAAGTCTTGA 1968 0.4187 MIGPGPAPRARPKRPLQFEQAYLNALPSANMSVSAPISYEKSYMHRDVVTHVAVSAADFFITGSSDGHLKFWKKKSIGIEFAKHFRSHLGPIEGLAVSIDGLLCCTISDDRSVKIYDVVNYDMMVMIRLPYTPGAVEWVYKQGDVKARLAISDRNSSFVHIYDARAGSNDPIVSKEIHMGPIKVMKYNAVYDSVLSADAKGIIEYWSPVTLQFPEDEVNFKLKSDTDLFEIAKCKTSVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTESAPLPNAVFDESSNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKRVRKIPSAAANVNESKEPLTDPTLLCCAFKKHRIYLFSRREPEEPEDATKGRDVFNEKPPADELLAVSDIGKSVTTSLPDNVILHTTMGDVHMKLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKRKIAVVVQSQIVTGSMCDSLMADSSWLDVSKVVLLSLGNMLMPSGNFLGLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVAKGMDVVQAIEKVKTDKTDKPYQDVKILNVTVPKS 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00750 655 SUPERFAMILY WD40 repeat-like 42 273 IPR036322 GO:0005515
Vimu4g00750 655 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 488 505 IPR020892 GO:0003755|GO:0006457
Vimu4g00750 655 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 454 652 IPR002130 GO:0000413|GO:0003755
Vimu4g00750 655 CDD cyclophilin_WD40 455 650 - -
Vimu4g00750 655 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 449 651 IPR044666 -
Vimu4g00750 655 Pfam WD domain, G-beta repeat 49 73 IPR001680 GO:0005515
Vimu4g00750 655 Pfam WD domain, G-beta repeat 83 117 IPR001680 GO:0005515
Vimu4g00750 655 SUPERFAMILY Cyclophilin-like 451 652 IPR029000 -
Vimu4g00750 655 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 599 611 IPR002130 GO:0000413|GO:0003755
Vimu4g00750 655 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 612 627 IPR002130 GO:0000413|GO:0003755
Vimu4g00750 655 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 467 482 IPR002130 GO:0000413|GO:0003755
Vimu4g00750 655 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 584 599 IPR002130 GO:0000413|GO:0003755
Vimu4g00750 655 ProSiteProfiles Trp-Asp (WD) repeats profile. 42 73 IPR001680 GO:0005515
Vimu4g00750 655 Gene3D - 38 429 IPR015943 GO:0005515
Vimu4g00750 655 FunFam Peptidylprolyl isomerase domain and WD-repeat protein 1 39 302 - -
Vimu4g00750 655 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 450 652 IPR002130 GO:0000413|GO:0003755
Vimu4g00750 655 SMART WD40_4 36 73 IPR001680 GO:0005515
Vimu4g00750 655 SMART WD40_4 168 207 IPR001680 GO:0005515
Vimu4g00750 655 SMART WD40_4 78 117 IPR001680 GO:0005515
Vimu4g00750 655 SMART WD40_4 224 263 IPR001680 GO:0005515
Vimu4g00750 655 Gene3D - 436 653 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00750 Vimu-Chr4 5889859 5896643 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00750 454 652 U-box Gene Family AT5G67530 36.181 7.14e-34 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00750 K12736 - gmx:100792207 1134.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00750 4 5889859 5896643 Vimu4g00750 4 5889859 5896643 ECH