Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00749 ATGGACGTAACCATGAACAATGATGACTACTCTTTCTCTTCATCACCATCGTCCACTTCTTCTCAAAGCCAACTTTGCAACCCAAATTCTCCATCGGATAATTCATCATCGCATGCACAAAAACCAGAGTTGAGTTCTCACAAGAGGAAAGCTGGGAGAAGAAAGTTTCGAGAAACACGGCATCCTGTGTATAGAGGAGTTCGTCAGAGAAACGGTAACAGATGGGTGTGTGAAGTTCGTGAACCCAACACGAAATCAAGGATATGGCTCGGAACATACTCCGCACCAGAAATGGCAGCTAGGGCACATGACGTGGCTGCCCTAGCACTTAAGGGCACCTCTGCAGCATTCAACTTCCCTGATTCAGTTTCTCTTCTTCCAGTTGCAAAGTCATCTTCAGCTGCAGATATTAGAGCGGCCGCGGCACAAGTTTCCGAGGTTTTTTTACCGACCAACCCTTCTTCTTCGTCCTTTACAAGGGTTGAAATTGAAACTAACCCTTGTTCGGTGGAGGGTGTTGTTGATTTTGCCAAGACTGTGACTAATGTTGAGGAGTCCAAGGAATCAGTGTTTTTTGACGAGGAGGAGATTTATAACATGCCAGGTTTGTTAGATAGCATGGCAGAGGGTCTTCTCATTACTCCGCCTTCTATGAAGAGATTTGATTGGGACGAGGTTGATTGTGAAACAGACCTCACTCTCTGGACATATTAA 714 0.4538 MDVTMNNDDYSFSSSPSSTSSQSQLCNPNSPSDNSSSHAQKPELSSHKRKAGRRKFRETRHPVYRGVRQRNGNRWVCEVREPNTKSRIWLGTYSAPEMAARAHDVAALALKGTSAAFNFPDSVSLLPVAKSSSAADIRAAAAQVSEVFLPTNPSSSSFTRVEIETNPCSVEGVVDFAKTVTNVEESKESVFFDEEEIYNMPGLLDSMAEGLLITPPSMKRFDWDEVDCETDLTLWTY 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00749 237 Pfam AP2 domain 62 112 IPR001471 GO:0003700|GO:0006355
Vimu4g00749 237 SUPERFAMILY DNA-binding domain 63 122 IPR016177 GO:0003677
Vimu4g00749 237 Gene3D AP2/ERF domain 63 121 IPR036955 GO:0003700|GO:0006355
Vimu4g00749 237 MobiDBLite consensus disorder prediction 47 61 - -
Vimu4g00749 237 CDD AP2 64 122 IPR001471 GO:0003700|GO:0006355
Vimu4g00749 237 MobiDBLite consensus disorder prediction 1 64 - -
Vimu4g00749 237 SMART rav1_2 63 126 IPR001471 GO:0003700|GO:0006355
Vimu4g00749 237 FunFam Ethylene-responsive transcription factor 2 62 121 - -
Vimu4g00749 237 MobiDBLite consensus disorder prediction 1 41 - -
Vimu4g00749 237 ProSiteProfiles AP2/ERF domain profile. 63 120 IPR001471 GO:0003700|GO:0006355
Vimu4g00749 237 PRINTS Ethylene responsive element binding protein signature 86 102 IPR001471 GO:0003700|GO:0006355
Vimu4g00749 237 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Vimu4g00749 237 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 12 237 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00749 Vimu-Chr4 5881958 5882671 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00749 30 237 AP2-EREBP Transcription Factor Family AT4G25470 43.062 5.58e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu4g00749 AP2 8.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00749 - - vra:106758293 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00749 4 5881958 5882671 Vimu4g00749 4 5881958 5882671 ECH
Vimu4g00749 4 5881958 5882671 Vimu5g01780 5 29548877 29549542 PCT