Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00745 ATGAATTTTGAGATCGAATACCCTTTTTCATTTCAATCTTCTTCCACCATTTTCCAATCATCATCAACCACACCACCTAATAATAATACTAACCCTAACCTACTTTCACATCCTTTAGTTCATGCACAATTTGTAGTTTCACCCAAAAGGAAAGGTGGGAGAAAGAAGTTCAAGGAAACGCGCCACCCAATTTATAGGGGTGTCCGACAAAGGAAGGGAAAGTGGGTTTGTGAGCTCAGGGAACCCAAGAAGACAACAAGGATTTGGTTAGGGACATACCCTACACCTGAAATGGCAGCTAGGGCACATGATGTGGGTGCCCTAGCAATTAGGGGTACCTCAGCGATTCTAAACTTTCCAAACTCAGCTTCTTTTCTTCCAATCCTTAACTCCTCTTCACCTAAAGATATTCGAGCAGCCGCAGCAGAAGCTGCTGAGAGTTTCAGACCGATCTCTCTTTCTTCCTTGTCCAATTCTCGTAACAAGAAAACCGGTCGCAAAACTAAGTGCAGGAGGGTTTGTAAAAAGGTTTCACCAATGGAGGAAAAGACACAGGAAAAAACAGTGTTGGACACGTCCTTGAATAATAACATGCACGATTTGGATCGTGAAAAATGTGATGTTATCAACAGTGGCATGGAGAAAAACGATTGTGATTTGTCTTCGACTGTGTTCTTCGATGAGGAGGCATTGTTTAACATGCCTGGTCTCTTGGATAGAATGGCAGAGAGTTTATGTCTTTTTCCATTACCTTCAGTGGATTATTGGGATGATCATGCTTATTTCACAGACTTCAATTTGTGGACTGATTGA 813 0.4194 MNFEIEYPFSFQSSSTIFQSSSTTPPNNNTNPNLLSHPLVHAQFVVSPKRKGGRKKFKETRHPIYRGVRQRKGKWVCELREPKKTTRIWLGTYPTPEMAARAHDVGALAIRGTSAILNFPNSASFLPILNSSSPKDIRAAAAEAAESFRPISLSSLSNSRNKKTGRKTKCRRVCKKVSPMEEKTQEKTVLDTSLNNNMHDLDREKCDVINSGMEKNDCDLSSTVFFDEEALFNMPGLLDRMAESLCLFPLPSVDYWDDHAYFTDFNLWTD 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00745 270 ProSiteProfiles AP2/ERF domain profile. 64 120 IPR001471 GO:0003700|GO:0006355
Vimu4g00745 270 SMART rav1_2 64 126 IPR001471 GO:0003700|GO:0006355
Vimu4g00745 270 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 13 269 IPR045277 GO:0003700
Vimu4g00745 270 Gene3D AP2/ERF domain 64 121 IPR036955 GO:0003700|GO:0006355
Vimu4g00745 270 PRINTS Ethylene responsive element binding protein signature 86 102 IPR001471 GO:0003700|GO:0006355
Vimu4g00745 270 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Vimu4g00745 270 SUPERFAMILY DNA-binding domain 64 122 IPR016177 GO:0003677
Vimu4g00745 270 CDD AP2 63 122 IPR001471 GO:0003700|GO:0006355
Vimu4g00745 270 Pfam AP2 domain 63 112 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00745 Vimu-Chr4 5819445 5820257 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00745 10 255 AP2-EREBP Transcription Factor Family AT4G25470 40.637 7.97e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu4g00745 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00745 - - vum:124831015 451.055