Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00733 ATGCCCTACTCATCCATGACTGACGGTTGTTTGGATGCAGAGCTGAACTTAGGGTTTTGTTGCTTGTTCCTTCGTCTCCTCTCAATCAAACAAGGCTCTCGTCCTCGCATAAACTTGGAAAACTTGTCTCTGATATCATTCCTCTCTTTCTCAACTAAATGCCGTTGCCTACACTTCAACGAAACCACTTCAATGATTGATTATCTAAATTCCAACTTCCAGTTCTCCAAAACCCAATCCCTTTATATCTCCAAACGTGTTTCGCGGGGCAAATTCCCTCAAAACCCCTTATCAGTGCTCACTTTCTTCAAACAAATAGGCTTTTCGCAAAGCCAGATTCTCTCCCTGATTCGTCAAAGACCCCAGATACTGTTTACAGACGTTGACAAAATCTTAAGATCCAAAATTGAGTTCTTTCAGATGTCTGGATTCCAGGATCGCGAGTTATGCAGCTTCATTTCAAAGCATCCCTCCATTTTGACTCATAGCTTGAAGAAAACATTGGTCCCCTCAGTTGAAGCTATTAGGAAAATTGTGTGCGACCAGAAAGATTTTATTCTTGTGTTGCACAGAGGTGGCTGGATACTCCCAAAGTACAAAAGGTTTATGGATAATGCCGTTTTCTTGGAGAGGTGTGGCATTCTTGGGACGCATCTTGCATTGCTACTCAAACTTCAACCAAGGCTTTTCATTGCACAGCAGTCCACTATTCAAAACCGTGTTTCTCGAGCTGTAGACTTGGGTTTCCGTGAAAATTCAAGAATGCTTGTCCATGCAATTCATACATTAAGTTGTTTGAGCGATAAAACATTTGAGAGAAAGCTGAAACTAATTAATAGTTTTGGGTTTTCCAACGATGAGGGCCTACAAATGTTGAAGAGAACCCCGACTTTGTTCAGAACATCAGAGATGAAGTTGAAAGTTGGAATGAAATTCTTCTTGCACACAGTTATGTTGCCTAAGTCAGTTCTTATTCACCGGCCTCAGATTTTAATGTACAGCATGGAGGATCGGGTGCTTCCTCGATATAAAGTCTTCCAGCTGTTGAAATCAAAAAATCTCTGCAAGAAAGGCCCCAGTTATATTCATGTGTTGTGCTTGTCTGAGGAGATGTTTTTGGACAAGAAGCCTGGGCAATTTTGGACCAACGATTTGGATGTTCTAGGGAGACAGCTGCTGGGGGTGGAGGACTGCACAGATGGTGATGAAGAATGTGTGCAGAGAAGAATGACTTTAGAAGCTCACCTAGACTACATCTACACTCAGCACCATAAGCCTTGA 1281 0.4215 MPYSSMTDGCLDAELNLGFCCLFLRLLSIKQGSRPRINLENLSLISFLSFSTKCRCLHFNETTSMIDYLNSNFQFSKTQSLYISKRVSRGKFPQNPLSVLTFFKQIGFSQSQILSLIRQRPQILFTDVDKILRSKIEFFQMSGFQDRELCSFISKHPSILTHSLKKTLVPSVEAIRKIVCDQKDFILVLHRGGWILPKYKRFMDNAVFLERCGILGTHLALLLKLQPRLFIAQQSTIQNRVSRAVDLGFRENSRMLVHAIHTLSCLSDKTFERKLKLINSFGFSNDEGLQMLKRTPTLFRTSEMKLKVGMKFFLHTVMLPKSVLIHRPQILMYSMEDRVLPRYKVFQLLKSKNLCKKGPSYIHVLCLSEEMFLDKKPGQFWTNDLDVLGRQLLGVEDCTDGDEECVQRRMTLEAHLDYIYTQHHKP 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00733 426 FunFam Mitochondrial transcription termination factor-like 164 376 - -
Vimu4g00733 426 PANTHER CGI-12 PROTEIN-RELATED 62 375 IPR003690 GO:0003690|GO:0006355
Vimu4g00733 426 Pfam Phytosulfokine precursor protein (PSK) 395 425 IPR009438 GO:0005576|GO:0008083|GO:0008283
Vimu4g00733 426 Gene3D Transcription termination factor 3, mitochondrial 201 379 IPR038538 -
Vimu4g00733 426 Gene3D Transcription termination factor 3, mitochondrial 68 200 IPR038538 -
Vimu4g00733 426 Pfam mTERF 266 373 IPR003690 GO:0003690|GO:0006355
Vimu4g00733 426 Pfam mTERF 100 184 IPR003690 GO:0003690|GO:0006355
Vimu4g00733 426 SMART mt_12 220 250 IPR003690 GO:0003690|GO:0006355
Vimu4g00733 426 SMART mt_12 150 181 IPR003690 GO:0003690|GO:0006355
Vimu4g00733 426 SMART mt_12 114 145 IPR003690 GO:0003690|GO:0006355
Vimu4g00733 426 SMART mt_12 321 352 IPR003690 GO:0003690|GO:0006355
Vimu4g00733 426 SMART mt_12 289 320 IPR003690 GO:0003690|GO:0006355
Vimu4g00733 426 SMART mt_12 254 284 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00733 Vimu-Chr4 5735018 5738169 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu4g00733 mTERF 2.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00733 K15031 - qsa:O6P43_021347 317.005