Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00728 ATGAAAGTCTTCTACCCTACTTTCCCTTTGCTTCATTCAATTTTTCTTCCAATGGAGTTTTGGGGTGCTGAGGTTAAGGTTGGGGAGTCTGTTAAGGTTGACCCAACTGAATTTGAGGCATGCATTCACCTTTCTCAGGCTGCGCTTGGTGAGGCAAAGAAAGACAAACCAAATGAACCTGCTGTTGTTGTGTACTTGAAGGTCGGTGAGCAGAAGTTTGTCCTGGGAACCCTCTCCAGGGAGAAAATCCCTCAAATATCCCTGGAATTGGTTCTGGAGAAGGAGTTTGAACTATCCCACAGTTCAAAGAGTGCCAGCGTACATTTCTGTGGATACAAGGCATATTACTCTGGCGATGAATATCCTTGGCATTACTGA 378 0.4497 MKVFYPTFPLLHSIFLPMEFWGAEVKVGESVKVDPTEFEACIHLSQAALGEAKKDKPNEPAVVVYLKVGEQKFVLGTLSREKIPQISLELVLEKEFELSHSSKSASVHFCGYKAYYSGDEYPWHY 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00728 125 SUPERFAMILY Nucleoplasmin-like core domain 20 92 IPR036824 -
Vimu4g00728 125 Gene3D Nucleoplasmin core domain 16 118 - -
Vimu4g00728 125 FunFam Histone deacetylase HDT1 18 118 - -
Vimu4g00728 125 Pfam Nucleoplasmin-like domain 20 112 IPR041232 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00728 Vimu-Chr4 5695247 5696382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00728 18 120 C2H2 Transcription Factor Family AT5G03740 49.515 5.49e-25 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00728 - - gmx:100792094 185.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00728 4 5695247 5696382 Vimu4g00728 4 5695247 5696382 ECH