Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00727 ATGGTAGGAAAACTTGAAAAGAAAGCTGAAGAATTGAAGGCACTTGCATCTAAAAAGCCTGACGCTAAGGCTGGTGCTGTAGCAAAAAAAGTCAAGGTTGTTGAGCCAGAGAAAGACAATGAGGATTCTGATGATGATTCTGATGAAGATGATGCTTTGGGAACTTCTGATGAAGAGATGGAGGATGCTGACAGTGATGACAGTGATGAGGAGGATGACAGTGATGAAGATGACGATGAAGAGACCCCTCCTAAAAAGGCCGATTTGGGAAAGAAGAGACCAAATGAATCTGCATCAAAAACTCCTGTCTCCTCCAAGAAAGCTAAAAATGCTACTCCTGAAAAGAAGGATGGTAAGAAAAACTTAAAAGCAGAAACCCCTCAATCCGTGAAGAAAGGTGGAAAGACTCCCAGCAGTGAAGCTAAGGACAAGAGTCCCAAGTCGGGTGGACTTATTTGCAAGAGTTGTAGCAAGTCTTTCAATTCCGAAAGTGGTCTGCAACAACATAACAAGGCCAAGCACGGCGGTCAGTGA 534 0.4363 MVGKLEKKAEELKALASKKPDAKAGAVAKKVKVVEPEKDNEDSDDDSDEDDALGTSDEEMEDADSDDSDEEDDSDEDDDEETPPKKADLGKKRPNESASKTPVSSKKAKNATPEKKDGKKNLKAETPQSVKKGGKTPSSEAKDKSPKSGGLICKSCSKSFNSESGLQQHNKAKHGGQ 177
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00727 177 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 177 IPR013087 -
Vimu4g00727 177 MobiDBLite consensus disorder prediction 152 171 - -
Vimu4g00727 177 MobiDBLite consensus disorder prediction 14 38 - -
Vimu4g00727 177 ProSitePatterns Zinc finger C2H2 type domain signature. 153 174 IPR013087 -
Vimu4g00727 177 MobiDBLite consensus disorder prediction 14 177 - -
Vimu4g00727 177 MobiDBLite consensus disorder prediction 39 82 - -
Vimu4g00727 177 MobiDBLite consensus disorder prediction 109 126 - -
Vimu4g00727 177 SUPERFAMILY beta-beta-alpha zinc fingers 143 173 IPR036236 -
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00727 94 174 C2H2 Transcription Factor Family AT5G03740 46.067 2.08e-14 67.8
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu4g00727 None None None
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00727 - - gmx:100792094 168.703