Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00723 ATGGCAGGGAGAGATAATTCGAAAAACAAAATCCCAGCATGGTCTTCAGATGTAAAAATGAAGAAGAGGGGTAGGCCTCCAAAGTCACATCGAGGTCGAGGACGTCCTCCTTCTTCTCCTAGCCCTTCCGGAGTTCGAGGAGGATATTCTCCTTCTCCTAGCTCTTCCGGATTTCGAGGATGTTCTCCTTCTCCTAGCCCTTCCCCAGTTTCTAACGTTGAATGGGGTTTTCTTCTTGTAAAACTCTATCGAGCCCATCATCATTGTTCCAAAGATGAGCATCTGATTTTTCAAAACTTGATTTGCTTGGTGGTGGACATGCAAACAGGGACTGGAACAGACTTAGTCCCTCACCAGCTCACTGTGAATGTTGGGGAGAACTTGATAGACAAGGTAGCAACATTTGCTAAAAGCTCCTCTCAAACCGTTTGCATACTTTCTTGTGTGGGTTCCATATCGAGCGTTGTCTTTCGCAAGCCAGGTTTTCCAAGTACTGATACTGTGACCTGGGAGGGTCGCTTTGATATTTTGTCACTATCTGGAAACTATACCTTTGTCCCTGGTCAGGATAATGTATATGATGGAGGACATAACTGCTGGAACCTTACAATATCTGATTGTCATGGAACAGTTTTTGGAGGTTCTGTTGTGGGGCCAATGATTGTGGCTACCCCTGTTTATCTTATTCTTGGCACTTTCAAGCTAGGGAGTGTGGAAAAAATAACATCTGGACCCGAATGCGCTACTGCTCCAACATCCGGACCCGCATGTGCTACTGCTCCAACATCCGGACCCGCATGTGCTACTGCTCCAACATCTGGACCCGCCTGTTCTACTGCTCCAACATCTGAACCTCTTCTCATTCCTAAAACAGAGTATCAAGAATCAGAGAGTCTCACTACTCCTAAAACAGCTGATAAAACTTCAGAGTGTGTGACTACTCCTAACACAGCTGATAAAACTTCAGAGAGTGTCACTACTCCTAAAGCAACTGATGAACCAACAGAAAATGTTACTTCTACCACAGAAAAGGTTCCCGGCGAAGATCCAAAGGGAGAAGGCGAAAAACAGAGTGTCACTCCTAAAATAACTGATAAACCACAGGAGGAACTCAGTTCTGAAACAGTTGATAAACCACCCGAGAATGTCACTCCTTCAACATCTGATAAACCACCTGAGAATGTCACTCCTTCAACATCTGATAAGCCACCTGAGGATGTCACTCCTGCAATGATAAACCGTCCTGAGAATGTTTCTCCTGCTACAACTAGAAAATCACCAGAGAATGTCGTTGCTTCAACATCTGATACATCATTACCTGCTTCGATATAG 1332 0.4474 MAGRDNSKNKIPAWSSDVKMKKRGRPPKSHRGRGRPPSSPSPSGVRGGYSPSPSSSGFRGCSPSPSPSPVSNVEWGFLLVKLYRAHHHCSKDEHLIFQNLICLVVDMQTGTGTDLVPHQLTVNVGENLIDKVATFAKSSSQTVCILSCVGSISSVVFRKPGFPSTDTVTWEGRFDILSLSGNYTFVPGQDNVYDGGHNCWNLTISDCHGTVFGGSVVGPMIVATPVYLILGTFKLGSVEKITSGPECATAPTSGPACATAPTSGPACATAPTSGPACSTAPTSEPLLIPKTEYQESESLTTPKTADKTSECVTTPNTADKTSESVTTPKATDEPTENVTSTTEKVPGEDPKGEGEKQSVTPKITDKPQEELSSETVDKPPENVTPSTSDKPPENVTPSTSDKPPEDVTPAMINRPENVSPATTRKSPENVVASTSDTSLPASI 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00723 443 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 19 314 IPR039605 GO:0003680
Vimu4g00723 443 Gene3D - 117 244 - -
Vimu4g00723 443 MobiDBLite consensus disorder prediction 346 376 - -
Vimu4g00723 443 CDD DUF296 117 233 IPR005175 -
Vimu4g00723 443 MobiDBLite consensus disorder prediction 255 280 - -
Vimu4g00723 443 MobiDBLite consensus disorder prediction 43 65 - -
Vimu4g00723 443 MobiDBLite consensus disorder prediction 415 443 - -
Vimu4g00723 443 MobiDBLite consensus disorder prediction 293 344 - -
Vimu4g00723 443 ProSiteProfiles PPC domain profile profile. 112 255 IPR005175 -
Vimu4g00723 443 SUPERFAMILY AF0104/ALDC/Ptd012-like 116 234 - -
Vimu4g00723 443 Pfam Plants and Prokaryotes Conserved (PCC) domain 117 233 IPR005175 -
Vimu4g00723 443 MobiDBLite consensus disorder prediction 249 443 - -
Vimu4g00723 443 MobiDBLite consensus disorder prediction 1 65 - -
Vimu4g00723 443 MobiDBLite consensus disorder prediction 377 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00723 Vimu-Chr4 5666783 5669492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00723 16 233 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 32.174 1.64e-22 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00723 - - vra:106758291 557.755