Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00722 ATGTGGCTGAACTACTGGACTGTCTGGAAATTTGCTTTATATGACTATCCAGGTGGAATAAACTTATTCAGAAACCATTTGAGGGTGGTGATGAAAGAGGGCTCAATTCTGCCTCCAGCTGATATGCAGGTAATTTACTGTGAACAGACAGAAGCTGAAAAGGACTTTTATGGAGCTCTATTCAAAAGATCTAAGGTAAAGTTTGATCAGTTTGTTGAGCAAGGACGAGTTCTTCATAATTATGCTTCAATATTGGAGTTACTTTTACGTCTTCGGCAATGTTGTGATCACCCATTTCTTGTAATGAGTCGAGGTGATACTCAAGATTTTGCGGATCTAAACAAACTAGCTAAGCGCTTCCTTAGAGGAACATATAATGCTTCCGATGGTGAAGTAAAAGAGGCACCTTCACGGGCTTATGTTCAAGAAGTTGTGGAGGAGCTACGTAAAAGGGAGCAAGGAGAGTGTCCAATATGCCTTGAAGCATTTGAAGATGCTGTGTTGACCCCTTGCGCTCACCGCTTGTGCAGGGAATGCCTCTTGGCAAGTTTGCGAAATGCTACTTCTGGCCTATGTCCTGTTTGTAGTACTTTTCTGATGAATGTTGGTCATGGTACATATTGTTTGATTTACAGGAAAGCAGTCAACAGGCAGGATCTAATCACTGCCCCTACTGAGAATCGGTTTCAGGTGGATATTGAGAAGAACTGGGTAGAGTCATGCAAGGTAACTGCTCTTTTGAATGAACTTCAAAATCTTCGCTCATCAGGCTCCAAAAGCATTGTTTTCAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATCCCCTTCGCTCGGAATAACATTTCATTTGTTCGTCTTGATGGGACTCTGAATCTGCAACAGCGGGAGAAAGTAATCAAGCAATTTTCAGAGGACAGCACGACTAAGGTGTTGTTAATGTCACTAAAAGCTGGTGGAGTGGGTATAAATCTAACTGCAGCTTCTAATGCTTTTGTCATGGACCCATGGTGGAATCCAGCTGTTGAGGAACAAGCTGTTATGCGTATTCATCGCATTGGACAAACAAAGAAGGTGGCCATTAAACGGTTTATTGTGAAGGAGACCGTTGAGGAGAGAATGGAAGCAGTACAAGCACGTAAACAACGAATGATTTCCGGTGCCTTGACTGATCAAGAGGTTCGAAGTGCGCGCATTGAGGAGTTAAAGATGCTTTTTACTTAG 1224 0.4281 MWLNYWTVWKFALYDYPGGINLFRNHLRVVMKEGSILPPADMQVIYCEQTEAEKDFYGALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQDFADLNKLAKRFLRGTYNASDGEVKEAPSRAYVQEVVEELRKREQGECPICLEAFEDAVLTPCAHRLCRECLLASLRNATSGLCPVCSTFLMNVGHGTYCLIYRKAVNRQDLITAPTENRFQVDIEKNWVESCKVTALLNELQNLRSSGSKSIVFSQWTAFLDLLQIPFARNNISFVRLDGTLNLQQREKVIKQFSEDSTTKVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVAIKRFIVKETVEERMEAVQARKQRMISGALTDQEVRSARIEELKMLFT 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00722 407 ProSiteProfiles Zinc finger RING-type profile. 156 196 IPR001841 -
Vimu4g00722 407 Gene3D - 38 151 IPR027417 -
Vimu4g00722 407 Gene3D - 205 406 IPR027417 -
Vimu4g00722 407 SMART helicmild6 271 354 IPR001650 -
Vimu4g00722 407 SUPERFAMILY RING/U-box 143 200 - -
Vimu4g00722 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 204 IPR013083 -
Vimu4g00722 407 Pfam Zinc finger, C3HC4 type (RING finger) 155 195 - -
Vimu4g00722 407 CDD SF2_C_SNF 238 365 - -
Vimu4g00722 407 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 37 407 - -
Vimu4g00722 407 ProSitePatterns Zinc finger RING-type signature. 171 180 IPR017907 -
Vimu4g00722 407 Pfam Helicase conserved C-terminal domain 242 354 IPR001650 -
Vimu4g00722 407 SMART ring_2 156 195 IPR001841 -
Vimu4g00722 407 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 242 407 IPR001650 -
Vimu4g00722 407 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 402 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00722 Vimu-Chr4 5659898 5665140 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00722 19 407 RAD5 or RAD16-like Gene Family AT5G22750 75.561 0.0 613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00722 K15505 - gmx:100794558 655.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00722 4 5659898 5665140 Vimu4g00722 4 5659898 5665140 ECH