Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00721 ATGGGGAGCAAGGTCAGCGACCAACACCTGTCCACCCTGAGATCCATCGTGGGTTCAGAATTCTCCGACATGGATATCATCAGAGCCCTCCACATGGCAAAAAACGACGTCAATGCGGCCATCAACATCATCTTGGACACTCACACCGCCCCGAGATTCAATCTCACGCGCCCCAAGAATCAACTTTCAGTCTCTCCTCCAAAACCCTCCCCTTCTACTCCTATGGTCACCAAGCCTAGCTTCAGTGAACAACACATTGATAATAACAGTGATGATTGGTGGTTGGTGAATTGCGGTGAAGTGACGGGTTTGTCCACGTGTAAAGGGAGGACTATAAATTTCGGTGAGACTGTGATTTTCAAGTTTCCAACAAAGAAATTATCCTCCCCCTCTACAGGAAAGGGGTTTGGACGGGCTGCGGCGTGTTCAGAGATAGTTCGATTCTCTACTGAACAAGCTGGGGAGGTTGTGTTGTGTAGGAGGTGGTGGAGTTTGATCAGATTAATCTGTGTTGTTATTGGTAGAATACCAAAGGAATGGGCTCGGTGTCTCTTGCCTCTTGTGCGAGATCATAAGGTTAGGATTGAGGGAAAGTGTAAATTTGCTCCTCAAGTTTTGGGCATCATGGACTCCATTATTTTGTCAGTTTCTCTCAAGGATGCTGCCAACTCGACGGATGAATCTGTGTTCCATCCGCTGCCAACACTGTTTCGGTTGCTGGGTTTAAACCCTTTTAAAGAGGTGATTGTTGGTCCTGTGTTTCTGATTCCTGTTATCGTCTTTTATAACGCAGAGTTAACTCCAGGCGATTTCTATTCCAACAAGCGTCCTCTCAGTGAAAGGGTAACATTACCACGTGCCAAGTTTGAGCATCCTTCTCAAAATGGCAATGAGAATGACAATGAGGAATCTATTTCTGAAATTGAGGTTGAGAATATTGTTGGTGTTGGATCAAGTGAAGAGTTAGAGGAAATGGACCCCCCTGCTAATCTTCAGTGCAATCTACGACCTTATCAAAAGCAGGCACTTTATTGGATGATCCAGATGGAGAAGGGAAAATGCATGGATGAGACTGCAACAACCCTCCATCCATGTTGGGAGGCATATCACCTAGCTGACAAGTATGCCAGTGAAAAATCAATGAGTGGTTTTGATGAAGTATTTGTTCTTGTACTTGTTAGGAGGGAGCTTATCATTTACTTGAATGCATTTTCTGGTGAAGCTACAATAGAATTTCCCAGCACCCTTCAAATGGCCAGAGGAGGAATTTTGGCAGATGCTATGGGGCTTGGAAAGACCATCATGACCATATCCCTTCTAGTTGCCCATTCAGGAAAGGGTGAATCAGTAGGCAATCAACCCATAGCCAATTCTTTTACTGAAGTTGGTGAAGTTAGTGATAATGTGCACACTTTTTCAAACATACCCAAGAAGGCAACCAAAATTTCTGGTTTTGATAAGCCAACAAAACAAATGAACTCTCTAACAAGTGGTGGCAACTTGATAATATGTCCGATGACTCTTCTTGGGCAATGGAAGGCAGAGATTGAAACTCACGTGCACCCTGGATCTCTTTCTCTATATGTTCACTACGGACAAAGTAGGCCAAAAGATGCAAAAAGTCTAGCTCAGAATGATGTTGTAATTACTACATATGGAATTTTGGCCTCTGAATTTTCCAGTGAGGTAGTTGAAACCTGTATACTACCTCTGATGTGCCTATTTACTTCATCTCTCAAGACTTTTCAACTAAATGCAGATGATAATGGTGGACTCTTCTCAATTCGGTGGTTTAGAGTTGTTCTTGATGAAGCACATACCATAAAATCTTCTAAGAGCCAAGTTTCTGTTGCAGCTGCTGCTCTAATTGCTGACAGACGTTGGTGTCTAACAGGCACTCCAATTCAGTGTGCATCTTTGGGTTGTGTAATTAGATTCTATCCATGTCATTATAGTTTCCTGGTTGATGAGGGTTTGCTCATTTGTGCTGAGATGTGGAGCCGGAAATTCTAA 2013 0.4337 MGSKVSDQHLSTLRSIVGSEFSDMDIIRALHMAKNDVNAAINIILDTHTAPRFNLTRPKNQLSVSPPKPSPSTPMVTKPSFSEQHIDNNSDDWWLVNCGEVTGLSTCKGRTINFGETVIFKFPTKKLSSPSTGKGFGRAAACSEIVRFSTEQAGEVVLCRRWWSLIRLICVVIGRIPKEWARCLLPLVRDHKVRIEGKCKFAPQVLGIMDSIILSVSLKDAANSTDESVFHPLPTLFRLLGLNPFKEVIVGPVFLIPVIVFYNAELTPGDFYSNKRPLSERVTLPRAKFEHPSQNGNENDNEESISEIEVENIVGVGSSEELEEMDPPANLQCNLRPYQKQALYWMIQMEKGKCMDETATTLHPCWEAYHLADKYASEKSMSGFDEVFVLVLVRRELIIYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTIMTISLLVAHSGKGESVGNQPIANSFTEVGEVSDNVHTFSNIPKKATKISGFDKPTKQMNSLTSGGNLIICPMTLLGQWKAEIETHVHPGSLSLYVHYGQSRPKDAKSLAQNDVVITTYGILASEFSSEVVETCILPLMCLFTSSLKTFQLNADDNGGLFSIRWFRVVLDEAHTIKSSKSQVSVAAAALIADRRWCLTGTPIQCASLGCVIRFYPCHYSFLVDEGLLICAEMWSRKF 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00721 670 MobiDBLite consensus disorder prediction 56 79 - -
Vimu4g00721 670 Gene3D - 413 646 IPR038718 -
Vimu4g00721 670 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 87 649 - -
Vimu4g00721 670 SMART ultradead3 331 658 IPR014001 -
Vimu4g00721 670 Pfam SNF2-related domain 338 636 IPR000330 GO:0005524|GO:0140658
Vimu4g00721 670 SMART HIRAN_2 96 220 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vimu4g00721 670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 322 636 IPR027417 -
Vimu4g00721 670 CDD DEXDc_SHPRH-like 418 636 - -
Vimu4g00721 670 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 413 636 IPR014001 -
Vimu4g00721 670 MobiDBLite consensus disorder prediction 285 305 - -
Vimu4g00721 670 Pfam HIRAN domain 100 216 IPR014905 GO:0003676|GO:0008270|GO:0016818
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00721 Vimu-Chr4 5655360 5658664 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00721 1 646 RAD5 or RAD16-like Gene Family AT5G22750 50.072 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu4g00721 SNF2_N 2.4e-51 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00721 K15505 - gmx:100794452 882.478