Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00720 ATGGAGCCTCCCGTTGTGAGATCTAGAGGTCGCCCGCGTAAACGGAGAAGAGAAGAGGACGGAACTGTTGCCGGCGATCCGAAGACGTTTCCTGAGGCGAAGAAGGCGCCTCCGGTTGCACTGGTTGGTCAATACGTGCTGAAAGAGTTCCGCGGGAACACGGTTCTTCTCGGTAAAGTCGTCCGCTACGAGAGCGGGTTGTACAGAGTCGTGTACGAGAGTGGCGGATTCGAGGATTTAGATAGCATCGCGATTCGTAGGATACTTCTCCTTGATAGCTATTTCGACGATGATTTAATTCGGAGGAAAGGCGAATTGGAGGAGTTGGTGTTGCCGAAGATTGCGGAGGTACAGGAGAGAAGTTCGAGCGAATTGCACGGCGATTTATTGGTTGAGAGCGAAGAAGAACGAGATGAAACGGACGACGAGTCGTGCAGCGAGGCTAGGGATTCGAGTTCCGATTCCGAAACGCCGATACCGTCTGCACCCACGCTGCCGCCTTCTTCTGGAACAATTGGCGTTCCGGAATCTTGCGTTCTGAATCTCCTTTCAGTGTACGGATTCCTGCGGTCGTTTAGCATTCGTCTGTTTCTCAGTCCTTTTACTTTAGACGAGTTTGTCGGTGCTTTGAACTGTAAAGTTTCTAACACGTTGCTTGATGCTATTCACATTTCGCTGATGCGTGTTTTGAGACGTCACCTCGAAAACATTTCACCAGATGGTTCGCGGCGCGCAACAAAATGCCTTAGGTGCAGTGATTGGAGTCTGCTTGATGCTTTGACTTGGCCTGTTTTTACGTTTCAGTATTTAGCAATTTATGGTTACACAAAGGGACCTGAGTGGAAAGGATTTTATGATGAAATCTTTCATGGCGAGTACTATTTATTGTCTGCAAGTAGGAAACTGATGATTTTGCAAATTCTCTGTGATGATGTTCTGGCATCTGAGGAGTTTAAAGCTGAAATGAACATGCGTGAAGAATCAGAGGTTGGGATTGATTATGATAATGAAGATAGCCTTCCTACTGAAATTGGGCCCAGAAGAGTTCATCCAAGATATTCCAAAACTACTGCCTGCAAGGATAGTGAAACTAAGAAGTATGTTTCAGAATTGAATGCTGAGGATGTTGATGGCAATGGAGATGAATGCCGCTTGTGTGGCATGGATGGAACTTTACTTTGTTGTGATGGTTGTCCTGCAGTTTATCATTCAAGGTGTATTGGTGTGATGAAGATGCATATACCGGATGGGGAATGGTATTGTCCAGAGTGCAAAATAAATATGATTGGGCCTTCTATTGCACGGGGAACATCACTGAAAGGTGCCGAAGTATTTGGAAAGGATTTGTATGGGCAAGTTTTCATGGGTACATGCGACCACTTACTGGTTGATGAATTTTGTCTTAAGTACTACAATCAGAATGACATTCCTGAAGTTCTCCAAGTTCTGACTGCATCGGAGCAACTTAGACCTATATACAATGGCATTTGCATGGCAATGTTAGAGTATTGGAAAATTCCAGAAAACTTCTTATCCATATGTGTCACAAGTGTACCGCAAGTAAACTTAACAAATTCAAATACAGACGTGAAACTTTCTCCCATGATTGAAGAAGAAAATCAAGCTGCAAGTTCGGTGAAGGCAGAATACAGTTTAACATTTTCAAATGGAAGTTGTAGTGATAATTTGGAACCATCTCTTGATGCTTCTTTGGTTACAAGTTGTGGTCCTGCTCCTGGAAGCAGGTACAATACGAGAACTACTGTGAATTTGAAGCTTTGTGAGGAAACTGCAATGAATTCGACATTTTCAGTTGTTAACCATCAGTTCAATCCCAAGTTTGAAAATTCTGTTAATAAGTCAACTGCAGTCGGCCCTGCTAAGTGCACCTTTGTAAACAACCAATTTAATAATTATGGGCACACAAATGACTCAAGGCTGCCTATGAATTTGTCTTTGCAAACTAAAGCTGACCAATCTGGTTTTGGAAAGTGCAAAGGCAGTTTGACTAAGGATTTTATGTACACTGGTTGCTCCTATAAACCACAGTCATATATTAATTGCTATATGCATGGTGATTTTGCGGCATCTGCTGCTGCTAACCTGGCCGTCCTTTCTTCTGAGGATTCCAGATCAGAGGGTCATGTGTCTGATAACTTGGGGAAAGCAACATCTGGAAACACTTATTTGCTTGCAAAAGCATTCTCCCAAACAGCTTCACGCTTCTTTTGGCCAAGTTCTGAAAAGAAGCTTGTAGAGGTTCCAAGAGAGAGGTGTGGCTGGTGCCTTTCTTGTAAAGCCCTTATTTCGAGCAAGAAAGGGTGCATGTTAAATCATGCTGCCCTGAGTGCCACCAAAAATGCAATGAAAATCCTTTCTGGTCTTGCTCCAGTAAGGATTGGAGAAGGAATCATTCCTAGCATTGCAACTTATGTTATATACATGGAGGAAAGTTTACGCGGTTTAATAGTTGGGCCCTTTATAAGTGAATGTTATAGAAGGCATTGGCGTAAACAAGTGGAACGGGCCACATCATTTAGTGATATAAAACCTCTTCTACTCAAACTCGAGGAGAACATTCGAACAATTGCTTTTTGTGGGGACTGGGTGAAGTTGACGGATGATTGGTTAGCTGAATTTTCTACAGTCCAAAGTGCTGCAGTTACTCTTGGAACTACACAGAAAGGTGCAACATGTGGGAGGCGTAAGAAACAGTTATCTATCAACAAAGTTACAGCCGGTGCTTGTCCTCAAAATTTTGTATGGTGGCATGGCGGGAAATTTTCCAAATGTGTATTCCAGAAAGCTGTTTTACCAAAATCCATGGCTAGAAAAGCAGCCCGACAAGGTGGTTTGAGGAAAATTTCTGGTATATTATATGCTGATGGCTCTGAGATTCCTAAAAGAAGCAGACAGGTTGTTTGGAGAGCAGCAGTTCAAATTAGTAGGAATGCATCCCAGTTGGCCCTTCAGGTTCGATATCTAGATTTTCATGTCAGATGGAACGATCTGATTCGTCCCGAGCACAACCTCCTAGATGTGAAAGGTCAAGATACTGAAGCATCTGCTTTTAGGAATGCAAATATTCATGAAAAAAGAATTGTGGAGGGCAAAATTTTGTATAGAGTAGCCTTTGGAAGCCAAAAACATCTCCCTTCTCGGGTAATGAAACACGTTGAAGTAGAGCGAGGTCCTGAAGGAAAGGAAAAGTTCTGGTTTTCTGAAAAACGGATTCCTTTATATTTGGTAAAAGAGTATGAAATGCGTAATGGAAAAATGCTTTCTGATAAAGAGTACATGTACATTACATCTCAGTTGCTGCACAAAAGGCGGAATGCTCTCAAGTGCAGTGCCTGTCAAGGTTATTGTCACACAGGTTGTTCAGTGAGTTCAACTGTCTCTACATGTGAAGAAGTTGAGTTCTTGGCCACATGCAAACAATGTCATCATGCCAAATTACTTACTCAAAAAGAGTCTTGTAATGAGTCTCCAACTAGTCCCTTACTCTTAGAAGGACAAGAACAAAGCACTTCAGCAGTTCTGAAGGGATCAGGGCCTAAATGTGATGGTCAAGAATTGATGTCTTCTAGGACAAAGAATAGTCGATCTGACGCAAAACGATTTGCTTCTGATTTCCCTTTGGAAACAAAAGGCCGTAGCAGAAATTGTTCTTGGGGTATTATATGGAAAAAGAAAAACAACGAAGATACGGGCTTTGATTTCCGGCTCAAGAACATTCTTCTAAAAGGAGGTTCAGGCCTGCCTCAATTGGAGCCTGTTTGTCGCTTGTGCCAAAAACCTTATAATTCTGATCTAATGTACATCTGTTGTGAAACATGTAAACATTGGTACCATGCTGAAGCTGTGGAACTTGAAGAGTCCAGACTGTTTGATGTGCTGGGCTTCAAATGTTGCAAGTGTCGCAGGATAAAGTCGCCTGTATGTCCTTTCTCTGATTTTAGTTACAGGACTCAAGAGGACAAGAGGTCTTCAAGGGCTTCAAAGAAAGATTACTTCGGGGGAGATTATGATTCTGGTACACCTATTGACAGGAGGACATGTGAGCCTGCAACTCCTGTCTGTCCTGCAGTGGATTTCTCTAGACAAGACAATGATCCTCTGCTGTTCTCCCTTTCAAGTGTTGAGCTGCTTGCAGAACCCGAGTTACATGCAAATGGTGTGGGCAATACTGTCTCTGGGCCAGGACTTCCTAAGATATCTAAACGTGAGAGGGAGAATAATGGTTCTTTTAGAGGTAATCTTCACGCTGAGTTCTCAACCAGCAATGAGATGCTTTCCAAATCAGTAAAAGATTTATCCCCTTCCGTTGAAGATGCCTCTGCTAACTGCAGTCTTTTGAAGGACCCCGAAATTGTAAATTATCACGAGTTCGTGGATTTTGAACCTCATACCTACTTCTCGCTGACTGAACTGCTCCACTCTGATGAGAATATTCAATCTGAGGAAGCTGACGCTTCTCAGGTCTTCTCGGGTTGTTTGAAAAATTCTTCTTGTGTTCCTGAAGGATGCGGAACTGTTAATTTAGCATCCAACTGTGAGCCTACAAATTTGGTACAAGGAAATGTTTATAGTTGTCGGCAATGTTCACAAAAGGAACCGCTCCCTGATCTCCATTGTGAGATTTGTAGGATTTGGATTCACACGCAGTGTTCACCTTGGGTGGAATCACCATCTCGGCTTGCAAGTTGGAGATGTGGTGATTGCCGGGAATGGCGATAG 4740 0.4293 MEPPVVRSRGRPRKRRREEDGTVAGDPKTFPEAKKAPPVALVGQYVLKEFRGNTVLLGKVVRYESGLYRVVYESGGFEDLDSIAIRRILLLDSYFDDDLIRRKGELEELVLPKIAEVQERSSSELHGDLLVESEEERDETDDESCSEARDSSSDSETPIPSAPTLPPSSGTIGVPESCVLNLLSVYGFLRSFSIRLFLSPFTLDEFVGALNCKVSNTLLDAIHISLMRVLRRHLENISPDGSRRATKCLRCSDWSLLDALTWPVFTFQYLAIYGYTKGPEWKGFYDEIFHGEYYLLSASRKLMILQILCDDVLASEEFKAEMNMREESEVGIDYDNEDSLPTEIGPRRVHPRYSKTTACKDSETKKYVSELNAEDVDGNGDECRLCGMDGTLLCCDGCPAVYHSRCIGVMKMHIPDGEWYCPECKINMIGPSIARGTSLKGAEVFGKDLYGQVFMGTCDHLLVDEFCLKYYNQNDIPEVLQVLTASEQLRPIYNGICMAMLEYWKIPENFLSICVTSVPQVNLTNSNTDVKLSPMIEEENQAASSVKAEYSLTFSNGSCSDNLEPSLDASLVTSCGPAPGSRYNTRTTVNLKLCEETAMNSTFSVVNHQFNPKFENSVNKSTAVGPAKCTFVNNQFNNYGHTNDSRLPMNLSLQTKADQSGFGKCKGSLTKDFMYTGCSYKPQSYINCYMHGDFAASAAANLAVLSSEDSRSEGHVSDNLGKATSGNTYLLAKAFSQTASRFFWPSSEKKLVEVPRERCGWCLSCKALISSKKGCMLNHAALSATKNAMKILSGLAPVRIGEGIIPSIATYVIYMEESLRGLIVGPFISECYRRHWRKQVERATSFSDIKPLLLKLEENIRTIAFCGDWVKLTDDWLAEFSTVQSAAVTLGTTQKGATCGRRKKQLSINKVTAGACPQNFVWWHGGKFSKCVFQKAVLPKSMARKAARQGGLRKISGILYADGSEIPKRSRQVVWRAAVQISRNASQLALQVRYLDFHVRWNDLIRPEHNLLDVKGQDTEASAFRNANIHEKRIVEGKILYRVAFGSQKHLPSRVMKHVEVERGPEGKEKFWFSEKRIPLYLVKEYEMRNGKMLSDKEYMYITSQLLHKRRNALKCSACQGYCHTGCSVSSTVSTCEEVEFLATCKQCHHAKLLTQKESCNESPTSPLLLEGQEQSTSAVLKGSGPKCDGQELMSSRTKNSRSDAKRFASDFPLETKGRSRNCSWGIIWKKKNNEDTGFDFRLKNILLKGGSGLPQLEPVCRLCQKPYNSDLMYICCETCKHWYHAEAVELEESRLFDVLGFKCCKCRRIKSPVCPFSDFSYRTQEDKRSSRASKKDYFGGDYDSGTPIDRRTCEPATPVCPAVDFSRQDNDPLLFSLSSVELLAEPELHANGVGNTVSGPGLPKISKRERENNGSFRGNLHAEFSTSNEMLSKSVKDLSPSVEDASANCSLLKDPEIVNYHEFVDFEPHTYFSLTELLHSDENIQSEEADASQVFSGCLKNSSCVPEGCGTVNLASNCEPTNLVQGNVYSCRQCSQKEPLPDLHCEICRIWIHTQCSPWVESPSRLASWRCGDCREWR 1579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00720 1579 CDD PHD_SF 1531 1575 - -
Vimu4g00720 1579 SMART testlast3 176 236 IPR018501 -
Vimu4g00720 1579 ProSiteProfiles Zinc finger PHD-type profile. 380 427 IPR019787 -
Vimu4g00720 1579 SMART PHD_3 382 425 IPR001965 -
Vimu4g00720 1579 SMART PHD_3 1260 1308 IPR001965 -
Vimu4g00720 1579 SMART PHD_3 1531 1576 IPR001965 -
Vimu4g00720 1579 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 280 323 IPR028942 -
Vimu4g00720 1579 CDD PHD2_CHD_II 383 424 - -
Vimu4g00720 1579 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 373 429 IPR013083 -
Vimu4g00720 1579 MobiDBLite consensus disorder prediction 1395 1421 - -
Vimu4g00720 1579 Pfam PHD-finger 383 425 IPR019787 -
Vimu4g00720 1579 SUPERFAMILY FYVE/PHD zinc finger 375 430 IPR011011 -
Vimu4g00720 1579 MobiDBLite consensus disorder prediction 122 169 - -
Vimu4g00720 1579 SUPERFAMILY FYVE/PHD zinc finger 1525 1577 IPR011011 -
Vimu4g00720 1579 ProSiteProfiles DDT domain profile. 176 236 IPR018501 -
Vimu4g00720 1579 Pfam DDT domain 178 233 IPR018501 -
Vimu4g00720 1579 SUPERFAMILY FYVE/PHD zinc finger 1256 1313 IPR011011 -
Vimu4g00720 1579 MobiDBLite consensus disorder prediction 1 30 - -
Vimu4g00720 1579 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1251 1320 IPR013083 -
Vimu4g00720 1579 PANTHER PHD FINGER FAMILY PROTEIN 36 1541 - -
Vimu4g00720 1579 ProSitePatterns Zinc finger PHD-type signature. 383 424 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00720 Vimu-Chr4 5630626 5637546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00720 267 566 EF-hand Containing Proteins AT5G22760 41.867 4.92e-69 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vimu4g00720 DDT 4.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00720 - - gmx:100808614 2562.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00720 4 5630626 5637546 Vimu4g00720 4 5630626 5637546 ECH
Vimu4g00720 4 5630626 5637546 Vimu5g01807 5 29930752 29931561 PCT