Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00707 ATGTTGTTTTCCCGGCAACAAGACCAACTCAAAAACCCTAATTTCCCACATTCACCTTTCACCGAATTCAAGGCCCTCTCTCGCCTCCTTCTCACCCCAATATTTCTCTTCATTGTTCAAATCCATTCATCTTCGTTGAAATTTTCCTATTTGTCTTCCTCGATTTTTTTTCTTCTTCCGTCGCCGTCTCAGAGCGGGTTTGTGTTTGAAGGTCCTTCAATGGCGGAGGACCGGAGTGAGGTGAGTGATTACAGTTCGGAGGACGAAGGAACTGAAGATTACAGGCGCGGAGGGTACCATGCGGTTCGAATTGGTGACACTTTCAAGAATGGGTGCTATGTGGTACAGAGCAAGCTTGGTTGGGGTCATTTTTCCACTGTGTGGCTCGCTTGGGACACTAACAAATCGCGATATGTTGCCTTAAAGATTCAAAAGAGTGCTCAGCATTACACTGAGGCGGCAATGGACGAGATAAAGATTCTCAAACAAATTGCTGATGGGGACCCAGATGACAAAAAATGTGTTGTAAAGCTTCTGGATAACTTTAAGCATTCAGGGCCTAATGGCCAGCATGTCTGTATGGTTTTTGAATTCCTTGGTGATAATCTTCTTACCCTTATCAAGTATAGTGATTACCGAGGTGTTTCCCTTCCTATGGTCAAGGAAATTTGTTTCCATATTTTGGTGGGTTTGGATTACTTGCACCGTGAGCTTTCGGTAATACACACTGATTTGAAGCCTGAGAATGTCCTGCTTCTGTCTCCCATAGATCCATCTAAGGATCCTAGAAAATCAGGTGTTCCACTTATCCTTCCAAACGCAAAGGATAAGGCTGTGACAAAAAATGGGATAACAATAGCCAATAAGAATGTTAATGGAGATCTAACCAAGAACCAGAAAAAGAAATTGCGGAAAAAGGCTAAAAAGTTAGCCCAGGGCTGTGTTGGAAGGGAACATGCCGAGGAAGCTGAGGAGGATTCAAAAGCACCTGATGAGCAAGATGATTGTAGTACTGATGTGAAGCCAAGTGTAGAATCTGGTGACAATAAACCTAATAGCCCTGGTAATAAAGATGAATCAATAAAGACTTCTGAAAATAAGGATGTTCCCCAAGGAAGTCATGGGCACAGGAGAGGTAGCCGCTCTACAAGAAAGAAGTTGCTTGCATCTGTTGATCTTAAGTGCAAGCTAGTTGATTTTGGTAATGCTTGTTGGACCTATAAACAATTCACAAATGATATTCAGACAAGGCAGTATAGGTGTCCTGAAGTTCTTCTTGGATCTAAATATTCAACTCCAGCTGACCTATGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCACCGGCGATGTTCTTTTTGATCCTCATAGTGGTGACAACTATGACAGGGATGAGGATCATCTAGCACTGATGATGGAGCTTCTTGGGATGATGCCTCGCAAGATTGCACTTGGTGGCCGCTATTCCCGTGATTTTTTCAACAGATATGGCGATTTGAGACACATCCGGCGATTGCGTTTCTGGCCTCTTAATAAGGTGATGATAGAGAAGTATGATTTCAGTGAAGAAGATGCAAATGCCATGGCTGAGTTCCTTCTTCCATTACTTGATTTTGTCCCTGAAAAGAGGCCAACCGCTGCACAGTGCCTTCAGCATCCATGGTTCAGTGCTGGTCCCCGGACTCTTGAGCCCTCAGTAGCTACGTCACAGCATGCTGCAATTGACGGGGAAATATCTGAAAAGATGCAGAGGGAAAAAGAGCAGGAGGGTGTGGAAGTTGGTATAGGGAATATGGCCATAGATGGAAATTCAAAGTAA 1818 0.4384 MLFSRQQDQLKNPNFPHSPFTEFKALSRLLLTPIFLFIVQIHSSSLKFSYLSSSIFFLLPSPSQSGFVFEGPSMAEDRSEVSDYSSEDEGTEDYRRGGYHAVRIGDTFKNGCYVVQSKLGWGHFSTVWLAWDTNKSRYVALKIQKSAQHYTEAAMDEIKILKQIADGDPDDKKCVVKLLDNFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGVSLPMVKEICFHILVGLDYLHRELSVIHTDLKPENVLLLSPIDPSKDPRKSGVPLILPNAKDKAVTKNGITIANKNVNGDLTKNQKKKLRKKAKKLAQGCVGREHAEEAEEDSKAPDEQDDCSTDVKPSVESGDNKPNSPGNKDESIKTSENKDVPQGSHGHRRGSRSTRKKLLASVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVMIEKYDFSEEDANAMAEFLLPLLDFVPEKRPTAAQCLQHPWFSAGPRTLEPSVATSQHAAIDGEISEKMQREKEQEGVEVGIGNMAIDGNSK 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00707 605 SUPERFAMILY Protein kinase-like (PK-like) 108 565 IPR011009 -
Vimu4g00707 605 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Vimu4g00707 605 SMART serkin_6 113 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00707 605 Gene3D Transferase(Phosphotransferase) domain 1 196 556 - -
Vimu4g00707 605 Gene3D Phosphorylase Kinase; domain 1 89 195 - -
Vimu4g00707 605 FunFam Serine/threonine-protein kinase SRPK-like protein 385 555 - -
Vimu4g00707 605 CDD STKc_SRPK 102 555 - -
Vimu4g00707 605 MobiDBLite consensus disorder prediction 311 326 - -
Vimu4g00707 605 FunFam CMGC/SRPK protein kinase 99 198 - -
Vimu4g00707 605 Pfam Protein kinase domain 113 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00707 605 Pfam Protein kinase domain 390 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00707 605 ProSitePatterns Protein kinases ATP-binding region signature. 119 142 IPR017441 GO:0005524
Vimu4g00707 605 ProSiteProfiles Protein kinase domain profile. 113 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00707 605 MobiDBLite consensus disorder prediction 297 384 - -
Vimu4g00707 605 MobiDBLite consensus disorder prediction 360 375 - -
Vimu4g00707 605 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 79 577 - -
Vimu4g00707 605 MobiDBLite consensus disorder prediction 342 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00707 Vimu-Chr4 5538367 5541790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00707 79 605 EF-hand Containing Proteins AT5G22840 70.301 0.0 736
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Vimu4g00707 Pkinase 1.5e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00707 K08832 - gmx:100791829 979.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00707 4 5538367 5541790 Vimu4g00707 4 5538367 5541790 ECH
Vimu4g00707 4 5538367 5541790 Vimu5g01816 5 30014778 30018462 PCT