Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00704 GAATTTGTCGTTGTACCACACTGGCTAGAAGTGTTCTTGTCTACTAAATTTTTCACCAAATGTGAAGAACACAGTGAACATATCAAAAGGGAATGCAACATGTTTTGCTTTGATTGTAGTAGTAACAAACCATTGTGTTTGTATTGTGTCAGATCCTATCACGAGAACCACCGAACGATTCAAATAAGAAGATCATCGTATCGAAGTGTGTTGAGAGTAAAAGATATCAAGGATGAGTTGGACACGAGTGGAATTCAATCGTACCTAATTAAGAAGTTTGATGTTATTTTTGTAAACAAGAGGAGTTTTGACGTGCATAGGAATAAAGCAACGAGTAAAAATTGTAGACACACTTTTCTATGCAATATCTGCAGAAGAAATATTTCAAACTCTACTAGCTTTTGCTCTTTGGAGTATAAGGTATCATATTAA 432 0.3472 EFVVVPHWLEVFLSTKFFTKCEEHSEHIKRECNMFCFDCSSNKPLCLYCVRSYHENHRTIQIRRSSYRSVLRVKDIKDELDTSGIQSYLIKKFDVIFVNKRSFDVHRNKATSKNCRHTFLCNICRRNISNSTSFCSLEYKVSY 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00704 143 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 5 140 - -
Vimu4g00704 143 Pfam PLATZ transcription factor 63 141 IPR006734 -
Vimu4g00704 143 SUPERFAMILY B-box zinc-binding domain 20 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00704 Vimu-Chr4 5502289 5502817 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Vimu4g00704 PLATZ 2.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00704 - - gmx:100787414 130.183