Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00702 TTTGTGGTTGTGCCACCCTGGCTAGAAGAATTTCTATCAATTACTACATTTTTCATCGAATGTGAAGAACACATTGAATGCATCAGAAGGGAATGCAACATGTATTGTTTTGATTGTAGTAGTGATAAACCATTGTGTTTATATTGTGTCAAATATTGTCACAAGAATCACCGAACGATTCAAGTAAGGAGATCAACTTATCAGAATGTGGTGAGAGTTGAAGATATCAAAGATGAATTGGACACAAGTGGGATTCAACTCTATGTAATTAATAAGTTTCATGTTGTTTTTCTGAACAAGAGGGGTTTTGATGTGCATAGGAAGAAAGGAATTGGTAAAAATTACAGCGACACTTCTCTCTGCAACATATGCACTAGAAATATTTCAAACCCTTCTCGATTTTGCTCTTTGGAGTGTAAGGTATCATATTAG 432 0.3495 FVVVPPWLEEFLSITTFFIECEEHIECIRRECNMYCFDCSSDKPLCLYCVKYCHKNHRTIQVRRSTYQNVVRVEDIKDELDTSGIQLYVINKFHVVFLNKRGFDVHRKKGIGKNYSDTSLCNICTRNISNPSRFCSLECKVSY 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00702 143 Pfam PLATZ transcription factor 63 141 IPR006734 -
Vimu4g00702 143 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 4 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00702 Vimu-Chr4 5485335 5485869 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Vimu4g00702 PLATZ 4.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00702 - - gmx:100787414 134.42