Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00699 ATGGCGGTTGCGGGTGTGCATAATGTGACTGCGCTCGAATCTACTTTCCTGAGGGAATCCCTTTCTCAGTCACCTGGGAGGCAAGGAGATGGAGGGAGGGGAGGCACACGGTCGTCTTCGGTCATGCAAATGTGGAGAGAGATTGAGGATGAGCAGGCAATAAGACCAGTTCAAGGAAGACCTGGGGAGGTTTTACTTCAACAAACGAGTGATGAGGTGGTTGTGGACACGTCGCAGGAAAATATGCCATATAGCAACCAGAGAGAAGGACGTGTGATAGAGGATACAGGTTTGGGAGAGAATGATTCTGAGACCTGGTCACAAAGTCAGAGTGAGTTCCATGACGAACAAGAGGAATTGAATAATTCTAGCCACGAAAACTCCTCTGATTTTGGAGAAGTTGAAAGGGAAAGAGTGAGGCAAATATTCAGGGAGTGGATGAATAGTGGTTCTAGGGATCGTGCATCGAATAATGCCCAAGGAAACAGAGGAGAATGGCGCGGGGAAAATGAGCAGGAAAGGGGCGGGGAAACGGATCAGGAACGAGTGAGTATCATAAGGGAGTGGGTGCAGACGAGTAGCCCACAGAGAGGTGTTTCTTCTGGGGAAAATAGGGAAGAACAATCTTCTGAAACTGGTACCCAAATTGAATGTGTTCGTGATGGATTTGTTAATCAGAACGACTGTCAAGCTGAGCATACACGGAGGGGAATCCGTAAATTATGTGGCCGACAGGTGCTGCTTGATATGCTTAAGAAGGCCCAGATGGAAAGACAAAGAGAAGTTCAGGAATTGTTGGACCATCGGGTTGTATCCCATTTCCCCCATCGTAATCGTATTCAGGCCTTGCTTAGAGGAAGGTTCTTGAGAAATGATAGATCGATTGGTAATAACAGGTCCACTTCCATTGCAGAAAGTGAATTAGGCTTATTAAGACAGAAGCAGACTGTATCAGGTCTAAGAGAAGGATTCTTTTCCAGAAAGGACAGTTTTGGTTGCAGTCAAGCAACCAGTAACCTATCTGATACCTCTTCCGAGAATGATATTGATGTTAATGCAATTGAACAAACTGGAGCTAGCAGTTCACAAGCCGTCCCAACTGTACATTCTGAACAATCCCGGCCTATTAACAATGGAAGTGACGGACTTGAGATACCATGTGATCAGATCTGTTCACAAGGAACCCCTTGTGAGAAATTAGACTGGCAAGGCTCTGCCGCTCATATAGAAACAATTGATCGGGAATCATCTTCCAGTATTCTAGTTGAAAGAGGAGATGACACTGGACAAACTGTTGCTATGATGTCAACTGAAGATTCTTCTAATGACCTTTCCCAACAAAGCTTGCAAATTGAAGATATAGAGGATGACAACATACAAGAGTTAAGCGAGGTACCTACTGAGCAATCTCAGTGGGGAGATATAACTAATGACGAAAGCAATTTATCAAATCAGGATGATCGTGTATATAGCAATATCGTTGGTGATGTAGACTTGATTGAATCTATTGCTCTGGAAGTAGAACATCAGGAAGAAGTTATTATTGAAAATGACAGAAGTGACTGGCATCAAAGTGTGGATGTTCATCAGCGCAGCAATACAACAAATGAGTGGCCCCAAAACATATTGGGTAGCGAAGATGGAGAAAATTCTCGTATGCAAGAGCAAGAAGCCCCTGAAGCGTGGCAAGAGGATGGTGGCTTTCAAGAGGCTGTGGAAATTTGGTTAGGAGGACCTTCTGATAATGAAGTAGCTCCAGTTGGTAGAATTCATGGGTTTTATTTTCCCGAAGATGACAATGTGTATAGCGTTGAACTCAGGGAATTGCTAAGTAGGAGAAGTGTCTCAAACCTCCTTCGCAGCAGTTTTCGTGAAAGTCTTGACCAGTTGATACAGTCGTATGTCGAAAGGCAAGGTCACGCTCATGTTGAATGGGAACTGCAAGAAACAACCCCTTCTTCTCCCTTGGCAGAACAAGACTCTGGACAAGAGACAAGGGATCCAGTTGTTGGTCCTCAGGGTACTGTTAATAGCTCACTTGACCACCGTCCCTTGCCACCAACACCTCCGCCCCAGCCTTTATGGGATCGGCACTCTCGCCATGACAATTGGTCACAGAGTGACATAAATAATCAGCGCCTAGGAATTGTGCGTTCATTTGCGGGACATAACTGCTTTTCTTTAGCTGATGTACTCCATAGTCTTGACATTCAAGAGTGGGATATTGTTAATGACTTAAGAATTGACATGGTTAGGCTACAGCAAAGGATGAATAATATGCAAAGAATGCTGGAAGCCTGTATGGATATGCAGCTTGAGTTACAACGCTCAATAAGACAAGAAGTCTCTGCAGCCTTAAATCGCTCAACTGGTTCGTCAGGAACACATGACCGTGTTTCACCTGACGATAAATCTAAATGGGAATGTGTGAGGAAAGGAGTTTGTTGTATATGCTGTGAAAGCAATATTGATTCTTTGTTGTACAGATGTGGGCATATGTGCACATGTTCAAAATGTGCAAATGCTTTGCACCAAAGTAAAAGAAAGTGTCCAATGTGTCAAGCACCAGTGGTGGAAGTGATACGTGCTTATTCAATACAATAG 2604 0.4416 MAVAGVHNVTALESTFLRESLSQSPGRQGDGGRGGTRSSSVMQMWREIEDEQAIRPVQGRPGEVLLQQTSDEVVVDTSQENMPYSNQREGRVIEDTGLGENDSETWSQSQSEFHDEQEELNNSSHENSSDFGEVERERVRQIFREWMNSGSRDRASNNAQGNRGEWRGENEQERGGETDQERVSIIREWVQTSSPQRGVSSGENREEQSSETGTQIECVRDGFVNQNDCQAEHTRRGIRKLCGRQVLLDMLKKAQMERQREVQELLDHRVVSHFPHRNRIQALLRGRFLRNDRSIGNNRSTSIAESELGLLRQKQTVSGLREGFFSRKDSFGCSQATSNLSDTSSENDIDVNAIEQTGASSSQAVPTVHSEQSRPINNGSDGLEIPCDQICSQGTPCEKLDWQGSAAHIETIDRESSSSILVERGDDTGQTVAMMSTEDSSNDLSQQSLQIEDIEDDNIQELSEVPTEQSQWGDITNDESNLSNQDDRVYSNIVGDVDLIESIALEVEHQEEVIIENDRSDWHQSVDVHQRSNTTNEWPQNILGSEDGENSRMQEQEAPEAWQEDGGFQEAVEIWLGGPSDNEVAPVGRIHGFYFPEDDNVYSVELRELLSRRSVSNLLRSSFRESLDQLIQSYVERQGHAHVEWELQETTPSSPLAEQDSGQETRDPVVGPQGTVNSSLDHRPLPPTPPPQPLWDRHSRHDNWSQSDINNQRLGIVRSFAGHNCFSLADVLHSLDIQEWDIVNDLRIDMVRLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSTGSSGTHDRVSPDDKSKWECVRKGVCCICCESNIDSLLYRCGHMCTCSKCANALHQSKRKCPMCQAPVVEVIRAYSIQ 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00699 867 ProSiteProfiles Zinc finger RING-type profile. 815 854 IPR001841 -
Vimu4g00699 867 MobiDBLite consensus disorder prediction 149 214 - -
Vimu4g00699 867 MobiDBLite consensus disorder prediction 529 551 - -
Vimu4g00699 867 SUPERFAMILY RING/U-box 814 860 - -
Vimu4g00699 867 MobiDBLite consensus disorder prediction 13 44 - -
Vimu4g00699 867 Coils Coil 743 770 - -
Vimu4g00699 867 MobiDBLite consensus disorder prediction 529 549 - -
Vimu4g00699 867 MobiDBLite consensus disorder prediction 1 44 - -
Vimu4g00699 867 Pfam Zinc finger, C3HC4 type (RING finger) 813 859 - -
Vimu4g00699 867 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 437 867 - -
Vimu4g00699 867 MobiDBLite consensus disorder prediction 647 703 - -
Vimu4g00699 867 MobiDBLite consensus disorder prediction 109 134 - -
Vimu4g00699 867 MobiDBLite consensus disorder prediction 185 214 - -
Vimu4g00699 867 MobiDBLite consensus disorder prediction 150 165 - -
Vimu4g00699 867 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 793 865 IPR013083 -
Vimu4g00699 867 MobiDBLite consensus disorder prediction 358 377 - -
Vimu4g00699 867 MobiDBLite consensus disorder prediction 76 134 - -
Vimu4g00699 867 CDD mRING-HC-C3HC5_NEU1 815 864 - -
Vimu4g00699 867 MobiDBLite consensus disorder prediction 647 682 - -
Vimu4g00699 867 MobiDBLite consensus disorder prediction 166 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00699 Vimu-Chr4 5432711 5439452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00699 815 861 C3H Transcription Factor Family AT3G06140 38.298 8.64e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00699 - - var:108334224 1363.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00699 4 5432711 5439452 Vimu4g00699 4 5432711 5439452 ECH
Vimu4g00699 4 5432711 5439452 Vimu5g01827 5 30170739 30175672 PCT