Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu4g00698 | ATGGCCAAGGGCACCGATTCCGACGAGTTCGTGTTGCTTTCTAGGGTCCGGACTGGTCTCAAGAGGGAGTTCGCGTTCGCAATGAAGGCCCAATCTGAGATCTGCGGCGCTTCTCTGGGCCGAACGCGGGCCAGCAAGAACCGCCCTGACCCTCCTGTTCAGACTGCATCTGCCCGGAAACGGTCCAGGAAGACCGTCGAGCCCAAAACGTCGGAGGACGTCTTGAGCGAGGAAGAGGCTAAGAGCGACGTGGTGGATCTTCAGAGCGATGATGAGCCGAAGAATAATCACGCGGGAGAGTCAGAGTCTGCGGCAATGTTGGTTTGTGAAGAGGAAACGAAGAGTGATGTGGCCATGGAAAATATTGTGGGCGAAGAGGAGCCGAAGGTGTTGGAAACTGTTATCTGCGAAGAGGAGCCGAAGGTGTTGGAAACTGTTATCTGCGAAGAGGAGCCGAAGTTGTTGGAAACTGTTATATGTGAAGAGGAGCCGAAGGTGTTGGAAACTGTTATCAGCGAGGAGGAACCGAAGGCGTTAGAAATTGTCGTGGGCGAAGAGGAACCGAAGGTGTTGGATAGTGGTGTCAATGAGGAGGAGCCTGTTGTGGCTGAGACGTTGAAGGAAGAGGTTGTGGATGAGAGGGCACAACCTCTTGGCGAAATTAATGAGGAATCGGAGAAGGGTGTTTCGGGAGATAAGGTTCCTAGTGGGGAAACCCTTGTTTTGGAGAATGATGATGATGATAAGGGGAAGAAGTATAAGAAGAGAACGAAAAAGTGGATTGAGAGGCTTCCGACTGTGAGAAGGTTTACGCGGTCGGCATTGAAGGAAAAACCCGATGAAGCAAATGACGAGAAAAATGTCGGTGCGGTTGGAGTTGATAATGTTATTAAGAGAGAATCAGAAACTGAGGCTTCGGTGGTAATGACCACTCCTATTTCGGGAAGATTTTCGAATTCTAGGTTGAGGAAATTTCCTTCCAAGTTGAAGGATCTTCTGGCTACGGGCATTCTTGACGGATTGACAGTGAGGTACATGAAAGGATCAAAGGCTCGAAAGAATGGAGAAACAGCGCTTCAAGGAGTGATTCGAAACTCTGGGATTCTGTGCTTTTGTGAGAGTTGCATGGGGATTGAGGTGGTCACGCCCACTGTGTTTGAGCTGCATGCTGGCAGTGCAAATAAACGTCCCCCGGAGTATATTTACATGGATTGTGGGAATGGTGGAAATAACCTCCGTGATGTCATGAATGCGTGCTGCGATTTGCCATTGGAGTCAATGGAGGAAGCCGTCCAAAAACTACTCGGTGGCTTCACCATGAACAAATCTTCGATCTGTTTACACTGCCGAGGAGCATGCAAGGGTGTGTCAAAGCTCGTATGCGATTGTTGCTTAGCAAGTCCCCCTCAAATAGCCACAGCAAGTAGCAAAAAGATTTCATCTCCGGTTCAATCAAGATCACCAGAGCCAGTAATGGTTCAAAAATCATTAGACAATGAGATGCAGTCAAATTCATTAGACAATGGAGTGCAACCAGACTCCCTAAATAATTGCTTGGCGCCAAACTCATTAATCAATGAGATGAAGCCAAATTTGTTACATAGTGGGATGAAGCTTGATTCATCAAACAGTGTGATGAGGCCAAATTCATTAAAGAATGGGATGAAGCACAGTGCATCTCGTGGTAAGAGTCAGGGAAGACTAACTAGGAAGGATCTGCGCTTGCATAAGTTGGTATTTGAAGGGGATGTTTTGCCTGATGGAACTGAAGTAGCCTACTATGCTCATGGAGAGAAACTGTTGGTTGGTTACAAAAAGGGATATGGGATATTTTGTACCTGCTGCAACAGTGAGGTCAGTGCTTCTCAGTTTGAAGCTCATGCTGGTTGGGCATCTCGACGAAAGCCTTACCTGCACATTTACACATCTAATGGAATCTCACTCCATGAGTTGTCCATCTCTTTATCAAAAGACAGGAGATTTTCCAACAATGATAATGATGATCTCTGCATCATATGTGAAGATGGAGGGGATCTTTTGTGTTGTGATGGATGCCCTAGAGCTTTTCACATAGACTGTGTCCCTTTGCCATGCATTCCTAGTGGTACTTGGTATTGTAAGTATTGCCAGAATGTTTTCCAGAAGGATAGGCAGGGGCAACATAATAAGAATGCTCTGGCAGCTGGAAGGATTGAAGGCACTGATATTTTGGAACAGATGAACCCAAGATGTATTCGTGTTGTCAGAACTGTAGAAGTTGACCATGGTGGATGTGCCTTGTGCAGTCGTCACAATTTCAGTAAAAGCTTTGGTCCTCGGACAGTAATTATTTGTGATCAGTGCGAGAAAGAATATCATGTTGGATGCTTGAAGGATCATAATATGCAGAACCTTGAGGAATTGCCTGAGGGGAATTGGTTTTGTGGCACATCTTGCAATCAAATTCATTCTGCTCTGGCAGATTTGGCAGCTTGCGGGGAAAAGAGTGTCCCAGAGTCCCTTCTAAGTTTGATTAAAAAGAAGCACGAAGAGAAAAGTTTAGACATTCAAGGTGACCTTGATGTTAAATGGAGGGTTATAAATTGGAAGCTAGATGATTCTGTCGAAAATAGGAAAAGGCTTTCAAAGGCTGTTGCTATCTTCCATGAAAGGTTTGATCCTATAGTTGATTCAACATCAGGCCGAGATTTCATTCCGACAATGTTGTTTGGAAGGAACATTCGGGGTCAAGACTTCAGTGGGATGTACTGTGCAGTGCTTACTGTCAATGGAGATATTGTGTGCGCTGGAGTATTTCGTGTCTTTGGGTCAGAAATTGCTGAGCTTCCATTGGTGGCAACAACTTCTGATCAACAAGGACAGGGTTATTTTCAGTGTCTATTTTCTTGTATCGAGACATTACTTGGTTCTTTGAATGTGAAAAACCTTGTCCTACCAGCTGCCGATGAAGCTGAATCGATATGGACCGGTAAATTTGGGTTTACAAAGCTAGCTCAAGATGAGATAAACAAGTATAAGAAATTTTATCGCATGATGATATTTCAAGGGACGTCGGTGTTACATAAGCCTGTTCCTGCGCTCTGA | 3084 | 0.4536 | MAKGTDSDEFVLLSRVRTGLKREFAFAMKAQSEICGASLGRTRASKNRPDPPVQTASARKRSRKTVEPKTSEDVLSEEEAKSDVVDLQSDDEPKNNHAGESESAAMLVCEEETKSDVAMENIVGEEEPKVLETVICEEEPKVLETVICEEEPKLLETVICEEEPKVLETVISEEEPKALEIVVGEEEPKVLDSGVNEEEPVVAETLKEEVVDERAQPLGEINEESEKGVSGDKVPSGETLVLENDDDDKGKKYKKRTKKWIERLPTVRRFTRSALKEKPDEANDEKNVGAVGVDNVIKRESETEASVVMTTPISGRFSNSRLRKFPSKLKDLLATGILDGLTVRYMKGSKARKNGETALQGVIRNSGILCFCESCMGIEVVTPTVFELHAGSANKRPPEYIYMDCGNGGNNLRDVMNACCDLPLESMEEAVQKLLGGFTMNKSSICLHCRGACKGVSKLVCDCCLASPPQIATASSKKISSPVQSRSPEPVMVQKSLDNEMQSNSLDNGVQPDSLNNCLAPNSLINEMKPNLLHSGMKLDSSNSVMRPNSLKNGMKHSASRGKSQGRLTRKDLRLHKLVFEGDVLPDGTEVAYYAHGEKLLVGYKKGYGIFCTCCNSEVSASQFEAHAGWASRRKPYLHIYTSNGISLHELSISLSKDRRFSNNDNDDLCIICEDGGDLLCCDGCPRAFHIDCVPLPCIPSGTWYCKYCQNVFQKDRQGQHNKNALAAGRIEGTDILEQMNPRCIRVVRTVEVDHGGCALCSRHNFSKSFGPRTVIICDQCEKEYHVGCLKDHNMQNLEELPEGNWFCGTSCNQIHSALADLAACGEKSVPESLLSLIKKKHEEKSLDIQGDLDVKWRVINWKLDDSVENRKRLSKAVAIFHERFDPIVDSTSGRDFIPTMLFGRNIRGQDFSGMYCAVLTVNGDIVCAGVFRVFGSEIAELPLVATTSDQQGQGYFQCLFSCIETLLGSLNVKNLVLPAADEAESIWTGKFGFTKLAQDEINKYKKFYRMMIFQGTSVLHKPVPAL | 1027 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu4g00698 | 1027 | MobiDBLite | consensus disorder prediction | 216 | 231 | - | - | |
| Vimu4g00698 | 1027 | Gene3D | - | 853 | 1022 | - | - | |
| Vimu4g00698 | 1027 | Pfam | Tify domain binding domain | 603 | 651 | IPR032308 | - | |
| Vimu4g00698 | 1027 | Pfam | Tify domain binding domain | 361 | 419 | IPR032308 | - | |
| Vimu4g00698 | 1027 | MobiDBLite | consensus disorder prediction | 60 | 98 | - | - | |
| Vimu4g00698 | 1027 | SUPERFAMILY | Acyl-CoA N-acyltransferases (Nat) | 913 | 997 | IPR016181 | - | |
| Vimu4g00698 | 1027 | ProSiteProfiles | Zinc finger PHD-type profile. | 667 | 712 | IPR019787 | - | |
| Vimu4g00698 | 1027 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 752 | 815 | IPR013083 | - | |
| Vimu4g00698 | 1027 | SMART | PHD_3 | 757 | 813 | IPR001965 | - | |
| Vimu4g00698 | 1027 | SMART | PHD_3 | 669 | 710 | IPR001965 | - |
Showing 1 to 10 of 20 entries
Duplication type information
Functional genes information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu4g00698 | - | - | var:108333944 | 1798.1 |
Showing 1 to 1 of 1 entries
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vimu4g00698 | 4 | 5407650 | 5415388 | Vimu4g00698 | 4 | 5407650 | 5415388 | ECH | |
| Vimu4g00698 | 4 | 5407650 | 5415388 | Vimu5g01830 | 5 | 30200374 | 30201966 | PCT |
Showing 1 to 2 of 2 entries