Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00698 ATGGCCAAGGGCACCGATTCCGACGAGTTCGTGTTGCTTTCTAGGGTCCGGACTGGTCTCAAGAGGGAGTTCGCGTTCGCAATGAAGGCCCAATCTGAGATCTGCGGCGCTTCTCTGGGCCGAACGCGGGCCAGCAAGAACCGCCCTGACCCTCCTGTTCAGACTGCATCTGCCCGGAAACGGTCCAGGAAGACCGTCGAGCCCAAAACGTCGGAGGACGTCTTGAGCGAGGAAGAGGCTAAGAGCGACGTGGTGGATCTTCAGAGCGATGATGAGCCGAAGAATAATCACGCGGGAGAGTCAGAGTCTGCGGCAATGTTGGTTTGTGAAGAGGAAACGAAGAGTGATGTGGCCATGGAAAATATTGTGGGCGAAGAGGAGCCGAAGGTGTTGGAAACTGTTATCTGCGAAGAGGAGCCGAAGGTGTTGGAAACTGTTATCTGCGAAGAGGAGCCGAAGTTGTTGGAAACTGTTATATGTGAAGAGGAGCCGAAGGTGTTGGAAACTGTTATCAGCGAGGAGGAACCGAAGGCGTTAGAAATTGTCGTGGGCGAAGAGGAACCGAAGGTGTTGGATAGTGGTGTCAATGAGGAGGAGCCTGTTGTGGCTGAGACGTTGAAGGAAGAGGTTGTGGATGAGAGGGCACAACCTCTTGGCGAAATTAATGAGGAATCGGAGAAGGGTGTTTCGGGAGATAAGGTTCCTAGTGGGGAAACCCTTGTTTTGGAGAATGATGATGATGATAAGGGGAAGAAGTATAAGAAGAGAACGAAAAAGTGGATTGAGAGGCTTCCGACTGTGAGAAGGTTTACGCGGTCGGCATTGAAGGAAAAACCCGATGAAGCAAATGACGAGAAAAATGTCGGTGCGGTTGGAGTTGATAATGTTATTAAGAGAGAATCAGAAACTGAGGCTTCGGTGGTAATGACCACTCCTATTTCGGGAAGATTTTCGAATTCTAGGTTGAGGAAATTTCCTTCCAAGTTGAAGGATCTTCTGGCTACGGGCATTCTTGACGGATTGACAGTGAGGTACATGAAAGGATCAAAGGCTCGAAAGAATGGAGAAACAGCGCTTCAAGGAGTGATTCGAAACTCTGGGATTCTGTGCTTTTGTGAGAGTTGCATGGGGATTGAGGTGGTCACGCCCACTGTGTTTGAGCTGCATGCTGGCAGTGCAAATAAACGTCCCCCGGAGTATATTTACATGGATTGTGGGAATGGTGGAAATAACCTCCGTGATGTCATGAATGCGTGCTGCGATTTGCCATTGGAGTCAATGGAGGAAGCCGTCCAAAAACTACTCGGTGGCTTCACCATGAACAAATCTTCGATCTGTTTACACTGCCGAGGAGCATGCAAGGGTGTGTCAAAGCTCGTATGCGATTGTTGCTTAGCAAGTCCCCCTCAAATAGCCACAGCAAGTAGCAAAAAGATTTCATCTCCGGTTCAATCAAGATCACCAGAGCCAGTAATGGTTCAAAAATCATTAGACAATGAGATGCAGTCAAATTCATTAGACAATGGAGTGCAACCAGACTCCCTAAATAATTGCTTGGCGCCAAACTCATTAATCAATGAGATGAAGCCAAATTTGTTACATAGTGGGATGAAGCTTGATTCATCAAACAGTGTGATGAGGCCAAATTCATTAAAGAATGGGATGAAGCACAGTGCATCTCGTGGTAAGAGTCAGGGAAGACTAACTAGGAAGGATCTGCGCTTGCATAAGTTGGTATTTGAAGGGGATGTTTTGCCTGATGGAACTGAAGTAGCCTACTATGCTCATGGAGAGAAACTGTTGGTTGGTTACAAAAAGGGATATGGGATATTTTGTACCTGCTGCAACAGTGAGGTCAGTGCTTCTCAGTTTGAAGCTCATGCTGGTTGGGCATCTCGACGAAAGCCTTACCTGCACATTTACACATCTAATGGAATCTCACTCCATGAGTTGTCCATCTCTTTATCAAAAGACAGGAGATTTTCCAACAATGATAATGATGATCTCTGCATCATATGTGAAGATGGAGGGGATCTTTTGTGTTGTGATGGATGCCCTAGAGCTTTTCACATAGACTGTGTCCCTTTGCCATGCATTCCTAGTGGTACTTGGTATTGTAAGTATTGCCAGAATGTTTTCCAGAAGGATAGGCAGGGGCAACATAATAAGAATGCTCTGGCAGCTGGAAGGATTGAAGGCACTGATATTTTGGAACAGATGAACCCAAGATGTATTCGTGTTGTCAGAACTGTAGAAGTTGACCATGGTGGATGTGCCTTGTGCAGTCGTCACAATTTCAGTAAAAGCTTTGGTCCTCGGACAGTAATTATTTGTGATCAGTGCGAGAAAGAATATCATGTTGGATGCTTGAAGGATCATAATATGCAGAACCTTGAGGAATTGCCTGAGGGGAATTGGTTTTGTGGCACATCTTGCAATCAAATTCATTCTGCTCTGGCAGATTTGGCAGCTTGCGGGGAAAAGAGTGTCCCAGAGTCCCTTCTAAGTTTGATTAAAAAGAAGCACGAAGAGAAAAGTTTAGACATTCAAGGTGACCTTGATGTTAAATGGAGGGTTATAAATTGGAAGCTAGATGATTCTGTCGAAAATAGGAAAAGGCTTTCAAAGGCTGTTGCTATCTTCCATGAAAGGTTTGATCCTATAGTTGATTCAACATCAGGCCGAGATTTCATTCCGACAATGTTGTTTGGAAGGAACATTCGGGGTCAAGACTTCAGTGGGATGTACTGTGCAGTGCTTACTGTCAATGGAGATATTGTGTGCGCTGGAGTATTTCGTGTCTTTGGGTCAGAAATTGCTGAGCTTCCATTGGTGGCAACAACTTCTGATCAACAAGGACAGGGTTATTTTCAGTGTCTATTTTCTTGTATCGAGACATTACTTGGTTCTTTGAATGTGAAAAACCTTGTCCTACCAGCTGCCGATGAAGCTGAATCGATATGGACCGGTAAATTTGGGTTTACAAAGCTAGCTCAAGATGAGATAAACAAGTATAAGAAATTTTATCGCATGATGATATTTCAAGGGACGTCGGTGTTACATAAGCCTGTTCCTGCGCTCTGA 3084 0.4536 MAKGTDSDEFVLLSRVRTGLKREFAFAMKAQSEICGASLGRTRASKNRPDPPVQTASARKRSRKTVEPKTSEDVLSEEEAKSDVVDLQSDDEPKNNHAGESESAAMLVCEEETKSDVAMENIVGEEEPKVLETVICEEEPKVLETVICEEEPKLLETVICEEEPKVLETVISEEEPKALEIVVGEEEPKVLDSGVNEEEPVVAETLKEEVVDERAQPLGEINEESEKGVSGDKVPSGETLVLENDDDDKGKKYKKRTKKWIERLPTVRRFTRSALKEKPDEANDEKNVGAVGVDNVIKRESETEASVVMTTPISGRFSNSRLRKFPSKLKDLLATGILDGLTVRYMKGSKARKNGETALQGVIRNSGILCFCESCMGIEVVTPTVFELHAGSANKRPPEYIYMDCGNGGNNLRDVMNACCDLPLESMEEAVQKLLGGFTMNKSSICLHCRGACKGVSKLVCDCCLASPPQIATASSKKISSPVQSRSPEPVMVQKSLDNEMQSNSLDNGVQPDSLNNCLAPNSLINEMKPNLLHSGMKLDSSNSVMRPNSLKNGMKHSASRGKSQGRLTRKDLRLHKLVFEGDVLPDGTEVAYYAHGEKLLVGYKKGYGIFCTCCNSEVSASQFEAHAGWASRRKPYLHIYTSNGISLHELSISLSKDRRFSNNDNDDLCIICEDGGDLLCCDGCPRAFHIDCVPLPCIPSGTWYCKYCQNVFQKDRQGQHNKNALAAGRIEGTDILEQMNPRCIRVVRTVEVDHGGCALCSRHNFSKSFGPRTVIICDQCEKEYHVGCLKDHNMQNLEELPEGNWFCGTSCNQIHSALADLAACGEKSVPESLLSLIKKKHEEKSLDIQGDLDVKWRVINWKLDDSVENRKRLSKAVAIFHERFDPIVDSTSGRDFIPTMLFGRNIRGQDFSGMYCAVLTVNGDIVCAGVFRVFGSEIAELPLVATTSDQQGQGYFQCLFSCIETLLGSLNVKNLVLPAADEAESIWTGKFGFTKLAQDEINKYKKFYRMMIFQGTSVLHKPVPAL 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00698 1027 MobiDBLite consensus disorder prediction 216 231 - -
Vimu4g00698 1027 Gene3D - 853 1022 - -
Vimu4g00698 1027 Pfam Tify domain binding domain 603 651 IPR032308 -
Vimu4g00698 1027 Pfam Tify domain binding domain 361 419 IPR032308 -
Vimu4g00698 1027 MobiDBLite consensus disorder prediction 60 98 - -
Vimu4g00698 1027 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 913 997 IPR016181 -
Vimu4g00698 1027 ProSiteProfiles Zinc finger PHD-type profile. 667 712 IPR019787 -
Vimu4g00698 1027 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 752 815 IPR013083 -
Vimu4g00698 1027 SMART PHD_3 757 813 IPR001965 -
Vimu4g00698 1027 SMART PHD_3 669 710 IPR001965 -
Vimu4g00698 1027 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 656 733 - -
Vimu4g00698 1027 ProSitePatterns Zinc finger PHD-type signature. 670 709 IPR019786 -
Vimu4g00698 1027 PANTHER AUTOIMMUNE REGULATOR 65 1024 - -
Vimu4g00698 1027 SUPERFAMILY FYVE/PHD zinc finger 751 809 IPR011011 -
Vimu4g00698 1027 CDD PHD1_AIRE 669 709 - -
Vimu4g00698 1027 MobiDBLite consensus disorder prediction 37 104 - -
Vimu4g00698 1027 MobiDBLite consensus disorder prediction 216 252 - -
Vimu4g00698 1027 SUPERFAMILY FYVE/PHD zinc finger 657 711 IPR011011 -
Vimu4g00698 1027 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 661 728 IPR013083 -
Vimu4g00698 1027 FunFam PHD finger family protein 854 1023 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00698 Vimu-Chr4 5407650 5415388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00698 322 1024 PHD Transcription Factor Family AT2G36720 45.742 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00698 - - var:108333944 1798.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00698 4 5407650 5415388 Vimu4g00698 4 5407650 5415388 ECH
Vimu4g00698 4 5407650 5415388 Vimu5g01830 5 30200374 30201966 PCT