Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00695 ATGATTTCAAGGGTGACATCTAGCTTCCAAAATCATCAAGGGCTTCAGATGTTCCCTGACCATGAAGATTTGGTGTCACCCTCTGTGGAATCTGACTCAGTTTCACACTCCAGTACCCTTCTCTTCAATCTCTCTATTCTCAAGGACAAGGTGAGTGAGGTGCAGACCCTAGTAGGTGTTATTCTCTCCCCAAATGAAACCCTGCCCGAGTCAACTTCCATGGCCATATCCAGCATGAACTCCACAATCCAAGAAATCCTAGTCACTGCCTCATCAATGATGTTCGCCTGCCAACAGATGGCTCTCACAACCCCTCCAGGTACTACTAATAATAACACCACTACATGCACCCACAGATTGCACCAGCCGAACAAGTTATTGCCTCACTCTAATTTTGGCACAAATAGAAGTCTGCTTGGTAACATAGCCATAGATATCAGTGACCATCATCAGGGTTGTTTATTTTCTAGCACTGAGTCAGAGGCACTGGACTGGTTTAGTGAAAGCTATAACAACAATAACGACGATAATAGCAATAACAATATTAGTAAGACTAAGGAAGATGATCCAGGCGTTGTAATTAGTGAAAACAAGATGATTATTAGTAGAGGTGGAGCTCCAAGGGAAGAACATATAGATGAACTTAACGAAGAAGGGTATAGTCATAGAGGGATTTCAGCGAAGAATAGTGATATAATTGAATTGGATGCTGCGGATTTGTTGGCTAAGTACACGCACTATTGCCAAATTTGTGGGAAAGGGTTCAAGCGTGATGCGAATTTGAGGATGCACATGAGGGCTCATGGGGATAAGTACAAGACGAATGCTGCATTGAGCAACCCAATTAAGAATAAGGGGAAGTTGGAAGGGGAAAGCGAGGTTTTGATGAGTGTGAAGGCAAAGAGATATTCTTGTCCTGAAGAAGGGTGTAGGTGGAACCAAAAGCACGCCAAGTTCCAGCCATTGAAGTCGATGATTTGTGCTAAGAATCATTACAAGAGAAGCCATTGCCCGAAAATGTATGTCTGCAAGAGATGCAACCAGAAACAGTTCTCTGTGCTCTCTGATCTTAGGACACATGAGAAACACTGCGGGGATCTCAAGTGGCAGTGCTCGTGTGGCACTTCCTTTTCTAGGAAAGACAAACTCATGGGCCATGTTTCTTTGTTCCTCGGACACCAACCAGCTACCAACAATGTTGCTCTCTCCTCATACTCTGGGACATTGCAAATGCAGATTGATGCTACCTCAAGATGA 1257 0.4391 MISRVTSSFQNHQGLQMFPDHEDLVSPSVESDSVSHSSTLLFNLSILKDKVSEVQTLVGVILSPNETLPESTSMAISSMNSTIQEILVTASSMMFACQQMALTTPPGTTNNNTTTCTHRLHQPNKLLPHSNFGTNRSLLGNIAIDISDHHQGCLFSSTESEALDWFSESYNNNNDDNSNNNISKTKEDDPGVVISENKMIISRGGAPREEHIDELNEEGYSHRGISAKNSDIIELDAADLLAKYTHYCQICGKGFKRDANLRMHMRAHGDKYKTNAALSNPIKNKGKLEGESEVLMSVKAKRYSCPEEGCRWNQKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLKWQCSCGTSFSRKDKLMGHVSLFLGHQPATNNVALSSYSGTLQMQIDATSR 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00695 418 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 28 399 IPR044300 GO:0010044|GO:0010447
Vimu4g00695 418 Gene3D Classic Zinc Finger 246 297 - -
Vimu4g00695 418 SUPERFAMILY beta-beta-alpha zinc fingers 245 269 IPR036236 -
Vimu4g00695 418 ProSitePatterns Zinc finger C2H2 type domain signature. 248 268 IPR013087 -
Vimu4g00695 418 Gene3D Classic Zinc Finger 339 389 - -
Vimu4g00695 418 FunFam Zinc finger protein 574 245 270 - -
Vimu4g00695 418 SMART c2h2final6 341 363 IPR013087 -
Vimu4g00695 418 SMART c2h2final6 246 268 IPR013087 -
Vimu4g00695 418 SMART c2h2final6 303 336 IPR013087 -
Vimu4g00695 418 ProSiteProfiles Zinc finger C2H2 type domain profile. 246 273 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00695 Vimu-Chr4 5373735 5374991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00695 213 396 C2H2 Transcription Factor Family AT5G22890 70.811 2.40e-92 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu4g00695 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00695 - - gmx:100802769 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00695 4 5373735 5374991 Vimu4g00695 4 5373735 5374991 ECH
Vimu4g00695 4 5373735 5374991 Vimu5g01833 5 30223716 30224837 PCT