Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00694 ATGGAAGGCATGGCCATGGAGGAATTTGTCTCATGCAACAACGATCCCACCAACATAGCCAAAGGGAAGCGGACAAAGCGCCGCCTCAGGCCTTTGTCACCTTGTGTTGTCAACGCCGTTACTGCCACGGCCGCCGCCATGACATCAAGCTGTTCCAGTGCTTCTGGCGGCGGCGGTGGCTCGTTTTCGTCTATCACCTTGGAGGAGGAAGAGGAAGACATGGCAAACTGTTTGATTCTCCTGGCACAGGGAAGAGGAGGAAGCGATCCTCTTCATCACAAGGACTTATGTGATGATGTCAAGACGGAGAAGGGTGGCACCAAAATTGAATTTTATGTTTACGAGTGCAAAACATGCAACAGAACATTCCCTTCTTTTCAAGCACTCGGTGGCCACAGGGCGAGTCACAAGAAGCCCAAGGTTGAGGAAAAGAAATCCCCACCACCGTCGTTGCCACCGCCACCGTCTTCGTCGTCGCAACTATTTAATTTTGAAGAAACGAAACTGAATCACATGAAGATTAGCCCTTCCGTTTCGCTTCAATTAGGGTGTGGAAACAATAGGGGTGGCTTAAATTTCCATGGGAACAAGTCCAAGATTCACGAGTGTTCCATTTGTGGGTCAGAATTCACATCAGGACAAGCATTGGGTGGCCACATGAGGAGGCATAGGTCATCTAACAACAATAATACTAATAATATCAATACTGTTGTTGTTCAGACGACGACGACGACAACTTCTGACGGTGTCGTTGAAGTTAAGCCTCGGAGTGTTCTACAATTAGATCTCAACCTGCCGGCGCCGGAGGACGATCTCCGGGACTCAAAGTTTCAGTTTTCGGGGAATCAGAATTCCATGATGCTGTCGGCTGCTCCGGCTTTGGTGGGATGCCATTATTAG 900 0.4911 MEGMAMEEFVSCNNDPTNIAKGKRTKRRLRPLSPCVVNAVTATAAAMTSSCSSASGGGGGSFSSITLEEEEEDMANCLILLAQGRGGSDPLHHKDLCDDVKTEKGGTKIEFYVYECKTCNRTFPSFQALGGHRASHKKPKVEEKKSPPPSLPPPPSSSSQLFNFEETKLNHMKISPSVSLQLGCGNNRGGLNFHGNKSKIHECSICGSEFTSGQALGGHMRRHRSSNNNNTNNINTVVVQTTTTTTSDGVVEVKPRSVLQLDLNLPAPEDDLRDSKFQFSGNQNSMMLSAAPALVGCHY 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00694 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 201 228 IPR013087 -
Vimu4g00694 299 ProSitePatterns Zinc finger C2H2 type domain signature. 116 136 IPR013087 -
Vimu4g00694 299 Pfam C2H2-type zinc finger 113 139 - -
Vimu4g00694 299 Pfam C2H2-type zinc finger 201 225 - -
Vimu4g00694 299 MobiDBLite consensus disorder prediction 130 161 - -
Vimu4g00694 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 141 IPR013087 -
Vimu4g00694 299 ProSitePatterns Zinc finger C2H2 type domain signature. 203 223 IPR013087 -
Vimu4g00694 299 Gene3D Classic Zinc Finger 111 223 - -
Vimu4g00694 299 SMART c2h2final6 201 223 IPR013087 -
Vimu4g00694 299 SMART c2h2final6 114 136 IPR013087 -
Vimu4g00694 299 PANTHER ZINC FINGER PROTEIN ZAT5 66 283 - -
Vimu4g00694 299 SUPERFAMILY beta-beta-alpha zinc fingers 113 223 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00694 Vimu-Chr4 5365915 5366814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00694 14 299 C2H2 Transcription Factor Family AT2G28200 43.750 4.97e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu4g00694 zf-C2H2_6 2.2e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00694 - - gmx:100788646 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00694 4 5365915 5366814 Vimu4g00694 4 5365915 5366814 ECH
Vimu4g00694 4 5365915 5366814 Vimu6g02462 6 21431021 21431842 ECH
Vimu6g02462 6 21431021 21431842 Vimu4g00694 4 5365915 5366814 ECH
Vimu3g01196 3 20424382 20425424 Vimu4g00694 4 5365915 5366814 ECH