Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00690 ATGGATGCAGTTCACCAAGACACACAGGCGTACATCAATGATTTTGAGCTGCACGACTTCGTTGACAATCCAAATTTTGATCAGTTCATCAATTTGATCCGAGGGGAGAATGAAGATGCTAACTGTGACTTCGGTTCTGACCTCATCACTGATTGCTTTGTTAACAATCAGCTCCTTCCATGCCCTGTAAACCCTTTTGATCAGAACTATAACAATGCTGTGAATGTCTATGATCAGAGCTCCACATTTAGCTCCTTTTCATGCTTTGATGGGGAGATGAAGGGAGAAGGAGAAGGGGAAAGAGAAGAAGAAGAAGAAGATCACGATGGAGAGCATTCTTCTGAAACAACAACAACGACCAAGAATGATGGTTCCAAGCCCAAGCTGAAAAATGACAGGTCCAAGACTCTCATTTCTGAAAGGAGAAGGAGAGGCCGAATGAAGGAGAAGCTTTACGCATTGCGTTCTTTGGTTCCCAACATAACAAAGATGGACAAGGCTTCCATAATTGGAGACGCAGTAGCATACGTGCATGAGCTTCAAGCTCAAGCTAGGAAGCTGAAGGCTGAAGTTGCAGGACTTGAAGCATCTTTATTAGTGCGTGAAAACTATCAAGGATCAATTAACAATCCCAAAAATGTGCAAGCTGCTCGAAATAGTCATCCAGTCTGCAAGAAGATCATGCAGGTGGAGATTGTGCAAGTGGAGGAAAGAGGGTATTATGTAAAAATAGTGTGCAATAAAGGAGAAGGAGTGGCTGCATCGTTGTTCAGAGCTCTTGAGTCTCTTGCAGGTTTTAGTGTTCAGAATTCAAACTTGGCTACAGTTTGTAACAGTTTTCAACTTACATTTACATTGAATATAAAAGGGTCTGAACCAGAAATTAACCTGCAAAATTTGAAGCTATGGGTGACTGGCGCTCTTCTGAACCAAGGTTTTGAATTTGTGGCATCTTTTTCTGGTTGA 966 0.4203 MDAVHQDTQAYINDFELHDFVDNPNFDQFINLIRGENEDANCDFGSDLITDCFVNNQLLPCPVNPFDQNYNNAVNVYDQSSTFSSFSCFDGEMKGEGEGEREEEEEDHDGEHSSETTTTTKNDGSKPKLKNDRSKTLISERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVAYVHELQAQARKLKAEVAGLEASLLVRENYQGSINNPKNVQAARNSHPVCKKIMQVEIVQVEERGYYVKIVCNKGEGVAASLFRALESLAGFSVQNSNLATVCNSFQLTFTLNIKGSEPEINLQNLKLWVTGALLNQGFEFVASFSG 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00690 321 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 201 IPR036638 GO:0046983
Vimu4g00690 321 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 13 311 - -
Vimu4g00690 321 MobiDBLite consensus disorder prediction 125 142 - -
Vimu4g00690 321 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983
Vimu4g00690 321 MobiDBLite consensus disorder prediction 91 142 - -
Vimu4g00690 321 Pfam Helix-loop-helix DNA-binding domain 138 181 IPR011598 GO:0046983
Vimu4g00690 321 Gene3D - 121 197 IPR036638 GO:0046983
Vimu4g00690 321 Coils Coil 177 197 - -
Vimu4g00690 321 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 127 197 - -
Vimu4g00690 321 SMART finulus 137 186 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00690 Vimu-Chr4 5335311 5336732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00690 12 313 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 54.313 1.55e-103 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu4g00690 HLH 4.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00690 K26214 - gmx:100805451 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00690 4 5335311 5336732 Vimu4g00690 4 5335311 5336732 ECH
Vimu4g00690 4 5335311 5336732 Vimu5g01838 5 30271497 30273605 PCT