Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00679 ATGGGAAGAGCTCCTTGCTGTGACAAGGCAAATGTGAAGAGAGGACCGTGGTCACCAGAAGAAGACTCAAAGCTGAAGGATTACATAGAGAAGCATGGAACTGGAGGGAATTGGATTGCTCTTCCTCAGAAAGCTGGTCTAAGGAGATGTGGAAAAAGTTGCAGATTGAGATGGCTTAACTATCTTAGGCCCAACATTAAGCACGGCGAATTCTCCGACGAGGAAGACAGAATAATCTGCAGCCTTTATGCTAATATTGGAAGCAGGTGGTCAATTATAGCTGCTCAGTTACCAGGGAGGACTGACAATGATATCAAGAACTATTGGAACACCAAGCTGAAGAGGAAACTCATGGGGTTGGTTCCTCCATCTCATCAAAGAATAGCACCTTATCAACACTCCTCGCAAAACCCTCCATCGCCATTTTCTTCTCAGACATCAATCTACAGAGACTACTGCAACAACTCTCCTTATTACATCCCAGCACCAACCTCATCTTTCCCATGCCTTCAACAAATTTCTGTTCCTTCAAGTAATTACACAAACACAACCTCCTCTCTTCCCTTTTATCAGAACCAAGAGCCTTTGGTCGGTGTTAGTCCCATGCAGTATTACCCCACCACAGACAGTTCCATGCTTGTGTTTGGAAGTGAAACAAGCTGCAGTTCCTCTGATGGGAGCTGCAGCCAGGTGAGCCTTTGCAGGGAGATAAAACAAGAAGAAATGGGATTTCAGAATTTGATGCTTGGAGATCAGCACATGAACAAGTTGATGGTGAGTCAAGGGAACGTGAATCACGATGGAGGTGAAGAGTACGTGAAGCAATGGACAGATAAACCAAATGGGTGGGTCTTCCAAACGCAAGAAACAGCACTGGATTATGATCTTGAGGTTATTAAGCAACTGATTAGTAGTAACAGTAGCAGTAATAATAGTAATAATGGGTATTTTAGTATTGATGAAAACAAGACGGAGAAGGGAGTGTACTACAACTAG 996 0.4367 MGRAPCCDKANVKRGPWSPEEDSKLKDYIEKHGTGGNWIALPQKAGLRRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICSLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKRKLMGLVPPSHQRIAPYQHSSQNPPSPFSSQTSIYRDYCNNSPYYIPAPTSSFPCLQQISVPSSNYTNTTSSLPFYQNQEPLVGVSPMQYYPTTDSSMLVFGSETSCSSSDGSCSQVSLCREIKQEEMGFQNLMLGDQHMNKLMVSQGNVNHDGGEEYVKQWTDKPNGWVFQTQETALDYDLEVIKQLISSNSSSNNSNNGYFSIDENKTEKGVYYN 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00679 331 FunFam Transcription factor MYB36 70 139 - -
Vimu4g00679 331 Gene3D - 69 138 - -
Vimu4g00679 331 Gene3D - 7 68 - -
Vimu4g00679 331 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vimu4g00679 331 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vimu4g00679 331 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vimu4g00679 331 CDD SANT 16 62 IPR001005 -
Vimu4g00679 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vimu4g00679 331 SMART sant 13 64 IPR001005 -
Vimu4g00679 331 SMART sant 67 115 IPR001005 -
Vimu4g00679 331 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vimu4g00679 331 CDD SANT 70 113 IPR001005 -
Vimu4g00679 331 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vimu4g00679 331 PANTHER OS09G0431300 PROTEIN 1 277 - -
Vimu4g00679 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vimu4g00679 331 FunFam Transcription factor RAX3 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00679 Vimu-Chr4 5242275 5243762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00679 1 119 MYB Transcription Factor Family AT5G57620 89.076 1.34e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu4g00679 Myb_DNA-binding 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00679 K09422 - gmx:100796382 538.495