Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00677 ATGCAGAGATCCGGCTATGGCTCCGACGGAATATTCAGATCTCTCAGACCTTCAATCGTTTTCCCCAAACAGCCCAACCTCACACTCGTTTCCCACCTCTTCAACAGAGTCGCACCGTTTCCCTCCAAACAAGCTCTTATCGATGCCGATTCTTCTCAAACCCTTTCCTTCCTACAGTTGAAGACGCTAACTGTTAAAGTCTCTCACGGCCTCCTCCGCCTCGGTGTCGCCAAAAACGACGTCGTCCTCTTCCTCGCCCCCAACGATATCCGCTACATCGTCTGCTTCCTCGCGGTCACCTCCCTCGGCGCTATCGTAACTACCGTCAACCCCACCTACACCGCTGCCGAGGTCGCCAAACAGGCCAAAGACTCCAATCCCAAACTTGTCATCACTGTCCCCGAGCTCTGGGACAAGCTCCAACACCTCAACCTCCCCGCCGTGTTCCTCCACTCCCAGGCGCACTCCCATGCCACTAGCTTCGATGCGCTCGTCCAACTCGCCGGGTCGCCTACTGAGTTTCCGAAAGTTGACGTCAAGCAGAGTGATACGGCGGTGCTGCTGTACTCCTCCGGGACCACCGGTGTGAGCAAGGGCGTGGTTCTAACTCACGGGAACTTCGTGGCGTCGTCGTTGATGATTGGGTTGGACGATGATTTGGCCGGGGAGATGCATAGCGTGTTCCTCTGCGTTCTGCCGATGTTTCATGTGTTTGGTTTGACGGTGATTTCGTACGCGCAGCTTCAGAGGGGCAACGCTGTGGTGTCTCTGAAGAAGTTTGAATTTGAACTGGTTTTGAAGACGGTTGAGAAGTTTAGAGTGACGCATTTGTGGGTTGTGCCTCCGATCATCCTTGCTCTGGCCAAACATGGTTTGGTCGATAAGTATGATCTTTCCTCGCTGAAGCATATTGGTTCTGGCGCTGCTCCTCTTGGGAAAGAGCTGATGGAGGAGTGTGCTAAGCGTTTCCCTCATGCTACTGTTGCTCAGGGATATGGTATGACTGAGACTTGTGGGATTGTTTCTGTTGAGAATACAAGGATGGGGATTCGGCATAGTGGCTCTACGGGAATGCTTGTTTCGGGAGTGGAAGCTCAAATAGTTAGCGTGGATACCCTGAAGCCTCTCCCTCCTGGACAGTTGGGGGAGATATGGGTACGGGGTCCTAATATGATGCAAGGCTATCACAACAATCCCCAAGCCACAAGATTGACTAAAGATACAAAAGGGTGGGTGCATACGGGAGATCTTGGATATTTTGATGAGGAAGGGCAACTTTTTGTTGTTGACCGTATCAAAGAACTGATCAAGTATAAAGGTTTCCAGGTTGCACCAGCAGAACTTGAAGGGCTTCTTGTTTCTCACCCTGAAATACTTGATGCTGTTGTCATCCCATATCCTGATGCTGAAGCCGGCGAGGTTCCAGTTGCCTATGTGGTTCGCTCACCACATAGTTCACTGACTGAGGAAGATGTTCAAAAGTTTATTGCTAATCAGGTAGCACCTTTCAAAAGATTACGAAGGGTGACATTCATCAATGCTGTTCCCAAGACAGCTTCGGGAAAAATTCTCCGAAGAGAGCTTATTGAGAAAGTAAGATCCAAAATATGA 1611 0.5053 MQRSGYGSDGIFRSLRPSIVFPKQPNLTLVSHLFNRVAPFPSKQALIDADSSQTLSFLQLKTLTVKVSHGLLRLGVAKNDVVLFLAPNDIRYIVCFLAVTSLGAIVTTVNPTYTAAEVAKQAKDSNPKLVITVPELWDKLQHLNLPAVFLHSQAHSHATSFDALVQLAGSPTEFPKVDVKQSDTAVLLYSSGTTGVSKGVVLTHGNFVASSLMIGLDDDLAGEMHSVFLCVLPMFHVFGLTVISYAQLQRGNAVVSLKKFEFELVLKTVEKFRVTHLWVVPPIILALAKHGLVDKYDLSSLKHIGSGAAPLGKELMEECAKRFPHATVAQGYGMTETCGIVSVENTRMGIRHSGSTGMLVSGVEAQIVSVDTLKPLPPGQLGEIWVRGPNMMQGYHNNPQATRLTKDTKGWVHTGDLGYFDEEGQLFVVDRIKELIKYKGFQVAPAELEGLLVSHPEILDAVVIPYPDAEAGEVPVAYVVRSPHSSLTEEDVQKFIANQVAPFKRLRRVTFINAVPKTASGKILRRELIEKVRSKI 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00677 536 ProSitePatterns Putative AMP-binding domain signature. 187 198 IPR020845 -
Vimu4g00677 536 Pfam AMP-binding enzyme 35 438 IPR000873 -
Vimu4g00677 536 Gene3D - 434 535 IPR045851 -
Vimu4g00677 536 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 531 - -
Vimu4g00677 536 FunFam 4-coumarate--CoA ligase 2 434 535 - -
Vimu4g00677 536 SUPERFAMILY Acetyl-CoA synthetase-like 19 534 - -
Vimu4g00677 536 Gene3D - 9 433 IPR042099 -
Vimu4g00677 536 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 433 - -
Vimu4g00677 536 CDD 4CL 21 528 - -
Vimu4g00677 536 Pfam AMP-binding enzyme C-terminal domain 447 522 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00677 Vimu-Chr4 5230106 5233951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00677 1 536 Monolignol Biosynthesis Gene Families AT4G05160 65.993 0.0 771
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00677 K01904 - gmx:100797843 942.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00677 4 5230106 5233951 Vimu4g00677 4 5230106 5233951 ECH
Vimu4g00677 4 5230106 5233951 Vimu5g01862 5 30476826 30480629 PCT