Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00673 ATGTACCAAACCTCACCTCCTACTCCTACTTCTTCCCCTGCACACGAAGCTTTGAACCCTAAGCCTTCGCTTCATCAGAAGTTTACACTTTCACAGTATACCATCAATCCAACGGAGGACTTTGGATCTATCGTCTTCTGGCTCTTTCATCAAAGCAAGAAGAAGGCTGCACAGAAGAAGGCGGCGGCGGCGGCCAAGAGAGGTGGCAAAGCGTTAGCTGCTTCTTCCAAAACGTCGACCTCCGAGAAGCCAGCCGACAAGCTCGCCGACGGAATTGGGGAGATTCAGATTTCCGATCGAACCTGCACCGGCGTCCTCTGCTCTCATCCTCTTTCTAGGGATATTAGGATAGAATCTCTCTCAGTTACTTTCCATGGACATGATTTGATAGTTGACTCTGAATTAGAGCTAAATTATGGAAGACGTTATGGCTTGCTCGGATTAAATGGTTGTGGAAAATCTACCCTCCTTACGGCAATAGGTTGTCGAGAGCTACCTATTCCAGATCACATGGATATTTATCACCTTACCAGAGAAATTGAAGCCTCTGACATGTCTGCATTGGAGGCTGTCATAAGCTGTGATGAGGAAAGGTTGAAATTGGAGAAAGAAGCTGAAGCTTTGGCAGCTCAGGATGATGGGGGTGGTGAAACACTTGAACGTGTTTATGAACGATTGGAAGCCTTAGATGCATCAACTGCAGAAAAGCGTGCTGCTGAAATTTTATCTGGTCTTGGTTTCAACAAGCAGATGCAGGCAAAGAAGACCCGTGATTTTTCTGGTGGATGGAGAATGAGGATAGCTTTAGCTCGTGCTCTATTTATGAACCCGACCATTCTTTTACTTGATGAACCAACCAATCACCTCGATTTGGAGGCTTGTGTTTGGCTAGAAGAGAATTTGAAAAGGTTTGACCGCATTCTGGTTGTGGTTTCACACTCCCAGGATTTCCTTAATGGTGTCTGCACAAATATCATCCACATGCAAAACAAGAAGCTGAAGCTCTATACTGGGAATTATGACCAATATGTTCAGACACGTGCTGAGCTGGAAGAGAACCAGATGAAGCAGTACAAATGGGAGCAGGAGCAGATTTCCTCCATGAAGGAATATATAGCTCGATTTGGTCATGGATCGGCCAAACTTGCACGGCAAGCCCAGAGTAAAGAGAAAACTCTAGCAAAAATGGAGCGGGGTGGACTAACAGAGAAGGTGGTAAGAGACAAAATTTTGGTATTCCGCTTTGTTGACGTGGGAAAACTTCCACCCCCTGTCCTCCAATTTGTTGAGGTGACATTTGGTTACACTACTGATAATCTGATCTACAAGAACCTTGACTTTGGGGTTGATTTAGACTCTAGGATTGCTCTGGTTGGACCAAATGGTGCTGGGAAGAGTACGTTACTGAAGCTAATGACTGGCGATCTGGTACCTGTGGATGGCATGGTTCGACGCCACAATCACCTTCGAATTGCTCAATTTCACCAGCACTTGGCTGAAAAGCTAGACTTGGAATTGTCTGCTCTACAGTTTATGATAAAAGAATACCCTGGAAATGAGGAGGAGAGGATGAGAGCAGCAATTGGTAAATTTGGACTGTCGGGTAAAGCGCAGGTGATGCCGATGAAGAATTTATCTGACGGGCAGAGGAGCCGCGTGATATTCGCATGGTTAGCTTATAGACAGCCTCACTTGCTACTTCTGGATGAGCCAACTAACCATTTAGATATTGAAACAATTGACTCATTGGCTGAGGCACTGAATGAATGGGACGGTGGCATGGTGCTTGTTAGTCATGATTTTAGACTCATAAATCAAGTGGCCCACGAGATATGGGTGTGCGCTGATCAAGCTGTGACCAGATGGGAAGGTGACATCATGGACTTTAAGGAGCACTTAAGATCAAAGGCGGGTTTATCTGACTGA 1926 0.4553 MYQTSPPTPTSSPAHEALNPKPSLHQKFTLSQYTINPTEDFGSIVFWLFHQSKKKAAQKKAAAAAKRGGKALAASSKTSTSEKPADKLADGIGEIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIYHLTREIEASDMSALEAVISCDEERLKLEKEAEALAAQDDGGGETLERVYERLEALDASTAEKRAAEILSGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKRFDRILVVVSHSQDFLNGVCTNIIHMQNKKLKLYTGNYDQYVQTRAELEENQMKQYKWEQEQISSMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDKILVFRFVDVGKLPPPVLQFVEVTFGYTTDNLIYKNLDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLVPVDGMVRRHNHLRIAQFHQHLAEKLDLELSALQFMIKEYPGNEEERMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAYRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQAVTRWEGDIMDFKEHLRSKAGLSD 641
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00673 641 FunFam ATP-binding cassette sub-family F member 3 386 640 - -
Vimu4g00673 641 MobiDBLite consensus disorder prediction 1 17 - -
Vimu4g00673 641 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 115 355 IPR003439 GO:0005524
Vimu4g00673 641 MobiDBLite consensus disorder prediction 1 22 - -
Vimu4g00673 641 Gene3D - 115 379 IPR027417 -
Vimu4g00673 641 Gene3D - 402 639 IPR027417 -
Vimu4g00673 641 CDD ABCF_EF-3 115 332 - -
Vimu4g00673 641 Pfam ABC transporter 326 398 IPR032781 -
Vimu4g00673 641 ProSitePatterns ABC transporters family signature. 259 273 IPR017871 GO:0005524|GO:0016887
Vimu4g00673 641 FunFam Abc transporter f family member 1 115 379 - -
Vimu4g00673 641 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 360 IPR027417 -
Vimu4g00673 641 SMART AAA_5 451 639 IPR003593 GO:0016887
Vimu4g00673 641 SMART AAA_5 139 341 IPR003593 GO:0016887
Vimu4g00673 641 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 409 620 IPR027417 -
Vimu4g00673 641 CDD ABCF_EF-3 426 617 - -
Vimu4g00673 641 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 426 641 IPR003439 GO:0005524
Vimu4g00673 641 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 86 636 - -
Vimu4g00673 641 Pfam ABC transporter 133 287 IPR003439 GO:0005524
Vimu4g00673 641 Pfam ABC transporter 442 573 IPR003439 GO:0005524
Vimu4g00673 641 Coils Coil 333 353 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vimu4g00673 Vimu-Chr4 5190210 5194259 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00673 246 313 Calmodulin-binding Proteins AT2G36910 42.857 2.98e-08 55.1
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00673 K06185 - gmx:100785099 1078.54
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00673 4 5190210 5194259 Vimu4g00673 4 5190210 5194259 ECH
Vimu4g00673 4 5190210 5194259 Vimu5g01867 5 30519827 30522850 PCT