Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu4g00673 | ATGTACCAAACCTCACCTCCTACTCCTACTTCTTCCCCTGCACACGAAGCTTTGAACCCTAAGCCTTCGCTTCATCAGAAGTTTACACTTTCACAGTATACCATCAATCCAACGGAGGACTTTGGATCTATCGTCTTCTGGCTCTTTCATCAAAGCAAGAAGAAGGCTGCACAGAAGAAGGCGGCGGCGGCGGCCAAGAGAGGTGGCAAAGCGTTAGCTGCTTCTTCCAAAACGTCGACCTCCGAGAAGCCAGCCGACAAGCTCGCCGACGGAATTGGGGAGATTCAGATTTCCGATCGAACCTGCACCGGCGTCCTCTGCTCTCATCCTCTTTCTAGGGATATTAGGATAGAATCTCTCTCAGTTACTTTCCATGGACATGATTTGATAGTTGACTCTGAATTAGAGCTAAATTATGGAAGACGTTATGGCTTGCTCGGATTAAATGGTTGTGGAAAATCTACCCTCCTTACGGCAATAGGTTGTCGAGAGCTACCTATTCCAGATCACATGGATATTTATCACCTTACCAGAGAAATTGAAGCCTCTGACATGTCTGCATTGGAGGCTGTCATAAGCTGTGATGAGGAAAGGTTGAAATTGGAGAAAGAAGCTGAAGCTTTGGCAGCTCAGGATGATGGGGGTGGTGAAACACTTGAACGTGTTTATGAACGATTGGAAGCCTTAGATGCATCAACTGCAGAAAAGCGTGCTGCTGAAATTTTATCTGGTCTTGGTTTCAACAAGCAGATGCAGGCAAAGAAGACCCGTGATTTTTCTGGTGGATGGAGAATGAGGATAGCTTTAGCTCGTGCTCTATTTATGAACCCGACCATTCTTTTACTTGATGAACCAACCAATCACCTCGATTTGGAGGCTTGTGTTTGGCTAGAAGAGAATTTGAAAAGGTTTGACCGCATTCTGGTTGTGGTTTCACACTCCCAGGATTTCCTTAATGGTGTCTGCACAAATATCATCCACATGCAAAACAAGAAGCTGAAGCTCTATACTGGGAATTATGACCAATATGTTCAGACACGTGCTGAGCTGGAAGAGAACCAGATGAAGCAGTACAAATGGGAGCAGGAGCAGATTTCCTCCATGAAGGAATATATAGCTCGATTTGGTCATGGATCGGCCAAACTTGCACGGCAAGCCCAGAGTAAAGAGAAAACTCTAGCAAAAATGGAGCGGGGTGGACTAACAGAGAAGGTGGTAAGAGACAAAATTTTGGTATTCCGCTTTGTTGACGTGGGAAAACTTCCACCCCCTGTCCTCCAATTTGTTGAGGTGACATTTGGTTACACTACTGATAATCTGATCTACAAGAACCTTGACTTTGGGGTTGATTTAGACTCTAGGATTGCTCTGGTTGGACCAAATGGTGCTGGGAAGAGTACGTTACTGAAGCTAATGACTGGCGATCTGGTACCTGTGGATGGCATGGTTCGACGCCACAATCACCTTCGAATTGCTCAATTTCACCAGCACTTGGCTGAAAAGCTAGACTTGGAATTGTCTGCTCTACAGTTTATGATAAAAGAATACCCTGGAAATGAGGAGGAGAGGATGAGAGCAGCAATTGGTAAATTTGGACTGTCGGGTAAAGCGCAGGTGATGCCGATGAAGAATTTATCTGACGGGCAGAGGAGCCGCGTGATATTCGCATGGTTAGCTTATAGACAGCCTCACTTGCTACTTCTGGATGAGCCAACTAACCATTTAGATATTGAAACAATTGACTCATTGGCTGAGGCACTGAATGAATGGGACGGTGGCATGGTGCTTGTTAGTCATGATTTTAGACTCATAAATCAAGTGGCCCACGAGATATGGGTGTGCGCTGATCAAGCTGTGACCAGATGGGAAGGTGACATCATGGACTTTAAGGAGCACTTAAGATCAAAGGCGGGTTTATCTGACTGA | 1926 | 0.4553 | MYQTSPPTPTSSPAHEALNPKPSLHQKFTLSQYTINPTEDFGSIVFWLFHQSKKKAAQKKAAAAAKRGGKALAASSKTSTSEKPADKLADGIGEIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIYHLTREIEASDMSALEAVISCDEERLKLEKEAEALAAQDDGGGETLERVYERLEALDASTAEKRAAEILSGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKRFDRILVVVSHSQDFLNGVCTNIIHMQNKKLKLYTGNYDQYVQTRAELEENQMKQYKWEQEQISSMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDKILVFRFVDVGKLPPPVLQFVEVTFGYTTDNLIYKNLDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLVPVDGMVRRHNHLRIAQFHQHLAEKLDLELSALQFMIKEYPGNEEERMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAYRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQAVTRWEGDIMDFKEHLRSKAGLSD | 641 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu4g00673 | 641 | FunFam | ATP-binding cassette sub-family F member 3 | 386 | 640 | - | - | |
Vimu4g00673 | 641 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Vimu4g00673 | 641 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 115 | 355 | IPR003439 | GO:0005524 | |
Vimu4g00673 | 641 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Vimu4g00673 | 641 | Gene3D | - | 115 | 379 | IPR027417 | - | |
Vimu4g00673 | 641 | Gene3D | - | 402 | 639 | IPR027417 | - | |
Vimu4g00673 | 641 | CDD | ABCF_EF-3 | 115 | 332 | - | - | |
Vimu4g00673 | 641 | Pfam | ABC transporter | 326 | 398 | IPR032781 | - | |
Vimu4g00673 | 641 | ProSitePatterns | ABC transporters family signature. | 259 | 273 | IPR017871 | GO:0005524|GO:0016887 | |
Vimu4g00673 | 641 | FunFam | Abc transporter f family member 1 | 115 | 379 | - | - | |
Vimu4g00673 | 641 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 109 | 360 | IPR027417 | - | |
Vimu4g00673 | 641 | SMART | AAA_5 | 451 | 639 | IPR003593 | GO:0016887 | |
Vimu4g00673 | 641 | SMART | AAA_5 | 139 | 341 | IPR003593 | GO:0016887 | |
Vimu4g00673 | 641 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 409 | 620 | IPR027417 | - | |
Vimu4g00673 | 641 | CDD | ABCF_EF-3 | 426 | 617 | - | - | |
Vimu4g00673 | 641 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 426 | 641 | IPR003439 | GO:0005524 | |
Vimu4g00673 | 641 | PANTHER | ATP-BINDING TRANSPORT PROTEIN-RELATED | 86 | 636 | - | - | |
Vimu4g00673 | 641 | Pfam | ABC transporter | 133 | 287 | IPR003439 | GO:0005524 | |
Vimu4g00673 | 641 | Pfam | ABC transporter | 442 | 573 | IPR003439 | GO:0005524 | |
Vimu4g00673 | 641 | Coils | Coil | 333 | 353 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu4g00673 | Vimu-Chr4 | 5190210 | 5194259 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu4g00673 | 246 | 313 | Calmodulin-binding Proteins | AT2G36910 | 42.857 | 2.98e-08 | 55.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu4g00673 | K06185 | - | gmx:100785099 | 1078.54 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vimu4g00673 | 4 | 5190210 | 5194259 | Vimu4g00673 | 4 | 5190210 | 5194259 | ECH | |
Vimu4g00673 | 4 | 5190210 | 5194259 | Vimu5g01867 | 5 | 30519827 | 30522850 | PCT |