Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00672 ATGGCCAAGCTCAGTGTAAGAAGCAGCAAGAGAAGTGTCAGTGACATTGTGAAGTTCAAATTCGTGGAGAAGCTCCAGAAGAGACTCTTACCAGGGAGAAGCAAAGAAGGGTCTGTTTCAAACTCAACGTATGTTCCAGAGGACGTGAAGGAAGGACACTTCGCTGTGATTGCTAAGGGTGGAGAAGAACACAAGAGGTTTGTGCTGCCACTCAGTTGTTTATCCAACCCTACGTTTTTGAAGCTGTTGGAGAAAGCAGAACAAGAGTATGGCTTTGATCATGAAGGTGCTGTCACCATTCCTTGCAGGCCCAGTGATCTTGAGAGGATACTGCCTCACCAATGGCATCATCAACCAAGAAAAACTTACAGAAAATCCATCGTTTTTTAA 390 0.4487 MAKLSVRSSKRSVSDIVKFKFVEKLQKRLLPGRSKEGSVSNSTYVPEDVKEGHFAVIAKGGEEHKRFVLPLSCLSNPTFLKLLEKAEQEYGFDHEGAVTIPCRPSDLERILPHQWHHQPRKTYRKSIVF 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00672 129 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 31 110 IPR003676 GO:0009733
Vimu4g00672 129 Pfam Auxin responsive protein 32 111 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00672 Vimu-Chr4 5186743 5187132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00672 25 103 Calmodulin-binding Proteins AT3G43120 47.561 3.89e-16 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00672 - K14488 gmx:102668167 179.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00672 4 5186743 5187132 Vimu4g00672 4 5186743 5187132 ECH
Vimu4g00672 4 5186743 5187132 Vimu5g01868 5 30525504 30525914 PCT