Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00663 ATGAATTCAATGGGCTCAGTGAATAACATCAGTGTAGTAGAGAGAGAATATGAATCTTTTTCAGTTAATGAAGGTCCTTCAATGGTGAGAAACAAGAGACGTTCTACCGGAGGTATGAAGAGGGACCGCCACATCAAGGTAAATGGAAGAGACCGTAGAGTTCGTCTATCAGCAATCTGTGCTGCTCGTATCTTCCAACTCACCCGTGAGCTAGGCAAGAAAACCGACGGTGAGACCATCGAATGGCTCTTACATAAGGCTGAACCCGCCATTCTGGCTGCCACTGGCACCGGCATTGTGCCTTCCATCACATCCTCGGTGAACAGTGCCGCCACCTTAATGACCAACACCACCACCACCTTGGTGCCATTAGACACAATTGCTGCTCAGAATGCCACCAACTTAGTCACCATTGCTGCGGTTGCAAGGACAGAACAGCCCATCCCTCCTTTCCATTTCGACTTTGAGTGGATGCAACATTCTGATTTAGGATTTCGTGGCAATTAA 507 0.4793 MNSMGSVNNISVVEREYESFSVNEGPSMVRNKRRSTGGMKRDRHIKVNGRDRRVRLSAICAARIFQLTRELGKKTDGETIEWLLHKAEPAILAATGTGIVPSITSSVNSAATLMTNTTTTLVPLDTIAAQNATNLVTIAAVARTEQPIPPFHFDFEWMQHSDLGFRGN 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00663 168 Pfam TCP family transcription factor 40 112 IPR017887 -
Vimu4g00663 168 ProSiteProfiles TCP domain profile. 40 94 IPR017887 -
Vimu4g00663 168 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 34 131 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00663 Vimu-Chr4 5098113 5098619 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00663 25 119 TCP Transcription Factor Family AT2G45680 64.211 1.67e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vimu4g00663 TCP 4.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00663 - - pvu:PHAVU_005G132500g 265.774