Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00660 ATGGCCACCAACGCCGCAAGTCCCACTCCCACACCGCGATCACAACAACGCTCCACCCAAAGCCCAACAACATCCTCCCCAAGGTCCACACTCAGGCCCAATCCTGGGCCCACCACTTCTTTCTCAGACAAACCCTCCACCTCTTACGCCTCCACCGCCAGCGCTCCCTACAGCGGCTCCACCGGCTACCGTCTCTCCTCCGACACCTCCATTGCCAGCCGCACCTCCCTCACCTCTCTTCGCGACACGCTCCCAGAAAACCCTCACATCTACGACTTCTCCGAAATCTGTGCCGCCACCAACAACTTCCTCGCCAAGCGACACTCCTCCTCCACCCCCTGCTGGCGCTGCACTCTCCGCGGAGCAGACGTCATTGTCTTCCAGCGCAAGTTCATCCGCAAACTCCAGACGAATCAACTCCAGCAACTGCTCTCCGTCGTCTGCCGCAGCCACCACGTCAGCATCATCAAACTCCTCGGCGCCTCCGTCTCCGGCGACCACATCTACCTCGTTTACGACTTCGTCAACGGCGCCAGCCTCTCCGATTGTCTTCGCAACAAGAACAACCCGCGCTTCACCGTTCTCTCCACATGGATGTCGCGAATGCAGGTCGCCACGGATCTCGCTCACGCACTCGATTACATTCACAACAAAACCGGTTTGAACATCAATTTCGTCCACAACCGTATCAAGTCCAGTGGCATCATCGTCACGGAACCTTCTTTCAACGCTAGGGTTTGCCATTTCGGCACCGCGCAGCTCTGCGGCGAAATCGACCTCGAAAACGAACAATTAGGTGAAATCAGTGAGATAGGGGAGAATTTTCCGCCGTCCCCGGCGAGATCCAGGCAATTCGAGGGCGTGCGGGGGTACATGGCGCCGGAATTTCAAGCCTCCGGCGTTGCGACTCAGAGGTCTGATATATACGCTTTCGGAGTGGTGATGTTGGAGCTCCTGTCCGGGCAGGAGCCACTGAAGTTTAAATATGACGAGAAGACGCGCGAGTTTTTGAGGACGTCGGTGATCGAGACGGCAAGAGGCGTGGTTGACGGCGGCGATGGTGGCGTGCAGGGGAAGCTGAGGAAGTGGGTTGATCAGAGATTGAAAGATTCGTTTCCCGTGGACGTAGCGGAGAAGCTGACACGTGTGGCACTGGAGTGCGTACACGTGGATCCGGATAAGCGACCGAACATGGGACACGTTGCAGGGAAGATCTCGAAGTTTTATTTGAAGTCGAGGATGTGGTCGGACAGTATTAAGGTTCCTGATATCACTGTTTCGTTGGGTCCTCGTTGA 1296 0.5664 MATNAASPTPTPRSQQRSTQSPTTSSPRSTLRPNPGPTTSFSDKPSTSYASTASAPYSGSTGYRLSSDTSIASRTSLTSLRDTLPENPHIYDFSEICAATNNFLAKRHSSSTPCWRCTLRGADVIVFQRKFIRKLQTNQLQQLLSVVCRSHHVSIIKLLGASVSGDHIYLVYDFVNGASLSDCLRNKNNPRFTVLSTWMSRMQVATDLAHALDYIHNKTGLNINFVHNRIKSSGIIVTEPSFNARVCHFGTAQLCGEIDLENEQLGEISEIGENFPPSPARSRQFEGVRGYMAPEFQASGVATQRSDIYAFGVVMLELLSGQEPLKFKYDEKTREFLRTSVIETARGVVDGGDGGVQGKLRKWVDQRLKDSFPVDVAEKLTRVALECVHVDPDKRPNMGHVAGKISKFYLKSRMWSDSIKVPDITVSLGPR 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00660 431 SUPERFAMILY Protein kinase-like (PK-like) 90 401 IPR011009 -
Vimu4g00660 431 Pfam Protein kinase domain 133 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00660 431 MobiDBLite consensus disorder prediction 1 66 - -
Vimu4g00660 431 ProSiteProfiles Protein kinase domain profile. 90 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00660 431 PANTHER OS09G0572100 PROTEIN 2 431 - -
Vimu4g00660 431 Gene3D Transferase(Phosphotransferase) domain 1 176 420 - -
Vimu4g00660 431 Gene3D Phosphorylase Kinase; domain 1 65 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00660 Vimu-Chr4 5088044 5089339 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00660 86 419 Receptor kinase-like Gene Family AT1G51940 31.361 9.26e-43 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vimu4g00660 Pkinase 3e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00660 - - gmx:100792694 684.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00660 4 5088044 5089339 Vimu4g00660 4 5088044 5089339 ECH