Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00658 ATGAGCAGTTTAAGGCCTGAGTCTCATGTGGCACAGCAAATTCGGCGCGAAAAATTGAGAATCCAAAACAGTTCTCAACCTCTGCACGAATTTCCCAACAATCTTGAACCGTTATCCTTACAGCCGGGGTTTAATAACTTTGACCTTCTTCATGTTAGGAATGTTAGAAACGCTAACATGCTCGACGAACCGGTTGTTTATCCACCAGAAATGACAAACTTCTCCACTTCTTTGAACCCTTTGTCTACTCCAAAGAACGCTTTGGAGTATCATCAAGAAATAGGTGCAGCTGAAGCGAGTAACAGGCTGATGATGAATCAGTACGGTTCATTTTCCCATTCCATGCCCTCTATTCAGTCTTCCCACAAGGAACAGTGTGAACTTCGTAATTTGGGAAATTGGAGGAACAGTGCTCCACAACAAGGATCTGATTGGTTTGCAAATTATCCAAGTAATGCCAATTCCTTTTTGTCTTCTGAGCTCAGCAATGTGTCTTCTTACAACGAACTAATGGATGTACAGTGTAGCAATGCATCTGATGAAATCAATGGTAGAGAAATTCAAAAGCAATTAGGTGGACTGCATAATCCTCCTCCTCCTCCTCCACTGTATCAAAATGCTTTGCAAGATATTGTGAAGTCTGCCTCTATCAGCGCCCACACTAGGCAAGACATGACTTCCCTAATGCAGCAAAATGACCACAGCATTTGGGTGGGTAATGGTACTGAAGTTGAGCTTCAACAGCCGAGTTATGGAAATCAGCCAAATCCGTTGCGTTTTGGATGGACAAATCGATCAATAGATAATATCACGAGTGATTCACTTCCTCAGAGCTTGTCCTTGTCACTTTCATCGAATGCTCAACCCAAGCCTTCAGTTTCTCAACATGAGCAAGGGTCTACATCCGATGATCCTCGTTGTTTGAAGTATATGACGCCGTCTATTGTCTCTAGAGATTTTCCGAAATCACTTCAAGACACGGTGGGAATGCCTTCGAAGAGTACTATAAGTTACCGAAGTGTGGGTCCCCTTGGCCCTTTTACAGGGTATGCTACTATTCTTAAGAGTTCAAGGTTCTTAAAGTCTGTCCAACAGTTGTTAGATGAGATTTTCTGTGTATCTGGTGCAAAGTTAGCGAAATCATATGATGTTTCAGAACGGGTTTCTCCAGAAGTTAGTGCTTCTACTTCTGCGGATACTGTTACTGTCAATAACACCGGTGTTACTGCAAAAGGTAGCAACTCAGGTTCTTCATCAACTATGTTGTATAATGTGTCAAAGGAAAATTGTTCTGATTTGGGAGTTGGAAGTAGCTTTGGTCTTTCTTCGCGGCCTGATTATCAACAGAAGAAAGCAAAACTGCTGTACATGCAAGAGGAGGTTACGAGGCAATGCAAGCAGTACCATCTACAAATGCAGATGGTTATTTCTTCGTTCGAGTCAGTGGCGGGTCTTAATTCTGCTACTCCTTACGTCTCCATGGCTCTCAAGTCAGTATCAAAACACTTCAGATGTTTAAAAAATTCTATCTCAGATCAGCTGAAGCTTATAAGCGAAGCCATGGGAGAGGATGTGTCAATACCCTCTTGCAGTACTGGCAGTAAAGCTGACACTACTATGGCAAGGATAAGATGCAGCATGGACCAAAGTTTTCTAAAGAACAAATCTGGCAGAGGGAGTACTACGGATCTTCTTGATCCACAACAGCATGTGTGGAGGCCCCAGAGAGGGTTGCCAGAGCGTGCAGTGGCAATTCTTAAAGCCTGGTTATTTGAGCATTTTCTTCATCCTTACCCTACAGACACTGATAAACACATGCTGGCTAGTCAAACAGGTCTATCACGGAATCAGGTATCAAATTGGTTCATAAATGCTCGAGTACGAGTATGGAAGCCAATGGTTGAGGAAATACACATGCTTGAAACAAAAGCAACAGGCAGCAGAGAGAAGAGTGGTAAACATGAGGGAACATCTTCTGGCCCTGAAGGTGGTGATAACAGGCAACCTAGAGTGGATAAGCCTTTGAGCAATATTGGTATGAATTCAATACCTGAAAACAGATTTGAGGGCATGGAAATGGAATCAAGCAATGCTGAGGAAAGAGGGTTAAGTGAAGAAGAATGGAGTCAAGAGAAAAGATCTAAATTGGAATGCCAAATGACTTCAAACAATATGGATGGTACATTGATGGGTTTTGTGCCATACCGACGTGGTGGCCTTGAGGTTGGTGGACTTGGTTCTGTGTCACTAACATTGGGTCTTAGACATGGCGTTGAAGGAGTACAACACCAACAACAATTGCAAGAGGAACAGCTTCGACATCATCACCTCGGAGGGCACATGATCCGTGACTATGTGGGCTGA 2364 0.4319 MSSLRPESHVAQQIRREKLRIQNSSQPLHEFPNNLEPLSLQPGFNNFDLLHVRNVRNANMLDEPVVYPPEMTNFSTSLNPLSTPKNALEYHQEIGAAEASNRLMMNQYGSFSHSMPSIQSSHKEQCELRNLGNWRNSAPQQGSDWFANYPSNANSFLSSELSNVSSYNELMDVQCSNASDEINGREIQKQLGGLHNPPPPPPLYQNALQDIVKSASISAHTRQDMTSLMQQNDHSIWVGNGTEVELQQPSYGNQPNPLRFGWTNRSIDNITSDSLPQSLSLSLSSNAQPKPSVSQHEQGSTSDDPRCLKYMTPSIVSRDFPKSLQDTVGMPSKSTISYRSVGPLGPFTGYATILKSSRFLKSVQQLLDEIFCVSGAKLAKSYDVSERVSPEVSASTSADTVTVNNTGVTAKGSNSGSSSTMLYNVSKENCSDLGVGSSFGLSSRPDYQQKKAKLLYMQEEVTRQCKQYHLQMQMVISSFESVAGLNSATPYVSMALKSVSKHFRCLKNSISDQLKLISEAMGEDVSIPSCSTGSKADTTMARIRCSMDQSFLKNKSGRGSTTDLLDPQQHVWRPQRGLPERAVAILKAWLFEHFLHPYPTDTDKHMLASQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKATGSREKSGKHEGTSSGPEGGDNRQPRVDKPLSNIGMNSIPENRFEGMEMESSNAEERGLSEEEWSQEKRSKLECQMTSNNMDGTLMGFVPYRRGGLEVGGLGSVSLTLGLRHGVEGVQHQQQLQEEQLRHHHLGGHMIRDYVG 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00658 787 SUPERFAMILY Homeodomain-like 574 639 IPR009057 -
Vimu4g00658 787 CDD homeodomain 572 633 IPR001356 GO:0003677
Vimu4g00658 787 Pfam Homeobox KN domain 589 628 IPR008422 GO:0003677|GO:0006355
Vimu4g00658 787 MobiDBLite consensus disorder prediction 278 307 - -
Vimu4g00658 787 Pfam Associated with HOX 353 511 IPR006563 -
Vimu4g00658 787 MobiDBLite consensus disorder prediction 641 656 - -
Vimu4g00658 787 ProSiteProfiles 'Homeobox' domain profile. 569 632 IPR001356 GO:0003677
Vimu4g00658 787 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 232 651 - -
Vimu4g00658 787 SMART prehox3 348 512 IPR006563 -
Vimu4g00658 787 MobiDBLite consensus disorder prediction 641 708 - -
Vimu4g00658 787 FunFam BEL1-like homeodomain protein 9 575 637 - -
Vimu4g00658 787 Gene3D - 575 637 - -
Vimu4g00658 787 SMART HOX_1 572 636 IPR001356 GO:0003677
Vimu4g00658 787 MobiDBLite consensus disorder prediction 692 708 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00658 Vimu-Chr4 5049792 5056328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00658 276 642 Homeobox Transcription Factor Family AT5G02030 43.089 3.70e-71 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vimu4g00658 POX 1.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00658 - - gmx:100790583 1152.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00658 4 5049792 5056328 Vimu4g00658 4 5049792 5056328 ECH
Vimu4g00658 4 5049792 5056328 Vimu5g01891 5 30766564 30772368 PCT