Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00644 ATGGCTTTTGGTAATTCTGGATCTGCAAGGTTTGAAGATGATCCGGAGCTAGCTAAATTTCCTGCAAGTAACGGTGACAACGGTTTCAAGATCAAATACCACATTGATGGGACACAAATACCTGAGCCTAGTTCCAAGATGGCTAAGAAAAAGGTGACGGGGAAGTTCTTGAAAGCTAGAATGTTGTCAAGAGTGTTCTCGGAAGACTATGACAGAGTCAAACGAAGAGTATTAGATCCCAGGGGACAAATCATACACCGATGGAACAAGATTTTCTTGGTAGCATGTTTAGTGTCTTTGTTTGTGGACCCTTTGTTCTTTTATCTGCCAGTGGTTCGAGATGAAGTGTGCATTGATATTGGAATAACTCTTGAGGTTATCCTCACTCTGGTAAGATCAGTGGGGGATGTCTTCTACGTGATTCAGATTTTGTTGAAGTTTCGTACGGCTTTTGTTGCTCCCTCTTCAAGGGTTTTTGGGAGAGGAGAACTTGTTGTAGGATATTCTAAGATTGCAGTTAGGTACCTTAAAAAGAGTTTCTGGTTAGACTTTGTTGCTGCCCTGCCCCTTCCTCAGGTGTTAATTTGGTTTATTATCCCAACTCTTAAGGGTTCAACCATGGGCAACACAAAAAATGTCCTTCGCTTCATCATCGTTTTCCAATACTTTCCGAGGCTAGTTTTGATTTTCCCACTCTCATCACAAATTGTAAAAGCTACAGGGGTGGTGACAGAAACAGCATGGGCAGGAGCTGCTTACAACCTAATGCTTTATATGTTGGCTAGCCATATTTTAGGGGCTTGCTGGTATCTTCTATCAATCGAGCGACAAGAAGCATGTTGGAGAAGTGTATGCGATTTGGAGAAGTCATTTTGTGAATATGGATTCTTTGACTGCCACAGGGTTAAAGATGCCCATAGGGTCTCCTGGTTTATAGCAAGTAATGTTACAAATTTATGCTCACCAAATGCAAAAGATGAATTCTATCAGTTTGGTATATACGCTGATGCCGTGACTTCTGAAGTTACATCCTCAGCATTCTTCAACAAGTACTTCTTCTGCCTGTGGTGGGGTCTAAGGAATTTGAGTTCTCTGGGACAAGGCCTTCTTACCAGCACATATGTTGGAGAGATAATGGTCGCCATTGTTATTGCAACTCTTGGATTGGTTCTCTTTGCGTTACTAATCGGTAACATGCAGACATATCTCCAATCAACTACTGTTCGCTTAGAAGAATGGAGGGTGAAAAGAACTGATACAGAACAATGGATGCATCACAGACAACTACCTCCAGAACTAAGAGAATCTGTGCGTAAATACGACCAATACAAATGGCTGGCCACACGAGGAGTAGATGAAGAATCTCTTCTCAAAGGACTCCCAGTGGATCTTCAAAGAGACATCAAACGCCACCTTTGTCTCGATCTAGTTCGAGGGGTGCCATTATTTGATCAAATGGATGAGAGAATGTTGGATGCAATCTGTGAAAGGCTGAAGCCTGCACTGTGCACAGAGGGAACGTTCCTTGTGCGAGAGGGTGATCCTGTGAATGAGATGCTCTTCATAATCAGGGGCCATCTTGATTCCTACACCACAAACGGGGGCAGGGCCGGGTTCTTCAACTCGTGCCGCATTGGGCCGGGTGATTTCTGCGGCGAGGAGCTTCTAACTTGGGCCTTGGACCCAAGGCCCAGTGTGATCCTCCCTTCGTCCACTCGAACAGTGAAAGCCATATCGGAAGTGGAGGCCTTTGCACTGATAGCGGAAGACCTGAAATTCGTGGCGTCACAGTTCAGAAGACTGCACAGCAAACAACTGAGACACAAATTCAGGTTTTACTCACACCAGTGGAGAACCTGGGCTGCGTGTTTCGTTCAAGCCGCGTGGAGAAGACATAAGAAGAGGAAGGAACTTGCTGAACTAAGGGCCAGAGCCATTAACAATGCAGAGCCTGAAACACCAACGTATGCCAAAAGGGTCTCTAGGAGTACTAGGAAAGCTGTTCATGTCTCTTCTCCCACAAATTCTGGAGTTGTGTCCTCTTTGCCCAAGCCAGCAGAACCAGATTTCTCTGTGGATGAACGATATTAA 2091 0.4476 MAFGNSGSARFEDDPELAKFPASNGDNGFKIKYHIDGTQIPEPSSKMAKKKVTGKFLKARMLSRVFSEDYDRVKRRVLDPRGQIIHRWNKIFLVACLVSLFVDPLFFYLPVVRDEVCIDIGITLEVILTLVRSVGDVFYVIQILLKFRTAFVAPSSRVFGRGELVVGYSKIAVRYLKKSFWLDFVAALPLPQVLIWFIIPTLKGSTMGNTKNVLRFIIVFQYFPRLVLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHILGACWYLLSIERQEACWRSVCDLEKSFCEYGFFDCHRVKDAHRVSWFIASNVTNLCSPNAKDEFYQFGIYADAVTSEVTSSAFFNKYFFCLWWGLRNLSSLGQGLLTSTYVGEIMVAIVIATLGLVLFALLIGNMQTYLQSTTVRLEEWRVKRTDTEQWMHHRQLPPELRESVRKYDQYKWLATRGVDEESLLKGLPVDLQRDIKRHLCLDLVRGVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRAGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFVQAAWRRHKKRKELAELRARAINNAEPETPTYAKRVSRSTRKAVHVSSPTNSGVVSSLPKPAEPDFSVDERY 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00644 696 Gene3D - 90 406 - -
Vimu4g00644 696 PRINTS EAG/ELK/ERG potassium channel family signature 143 152 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu4g00644 696 PRINTS EAG/ELK/ERG potassium channel family signature 260 270 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu4g00644 696 PRINTS EAG/ELK/ERG potassium channel family signature 395 404 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu4g00644 696 PRINTS EAG/ELK/ERG potassium channel family signature 351 368 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu4g00644 696 PRINTS EAG/ELK/ERG potassium channel family signature 445 452 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu4g00644 696 SMART cnmp_10 482 613 IPR000595 -
Vimu4g00644 696 Gene3D Helix hairpin bin 409 473 - -
Vimu4g00644 696 FunFam Cyclic nucleotide-gated ion channel 1 480 598 - -
Vimu4g00644 696 SUPERFAMILY cAMP-binding domain-like 412 608 IPR018490 -
Vimu4g00644 696 MobiDBLite consensus disorder prediction 652 696 - -
Vimu4g00644 696 CDD CAP_ED 482 613 IPR000595 -
Vimu4g00644 696 SUPERFAMILY Voltage-gated potassium channels 79 404 - -
Vimu4g00644 696 ProSiteProfiles cAMP/cGMP binding motif profile. 482 579 IPR000595 -
Vimu4g00644 696 FunFam Cyclic nucleotide-gated ion channel 1 409 473 - -
Vimu4g00644 696 Pfam Ion transport protein 88 409 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vimu4g00644 696 Gene3D Jelly Rolls 480 600 IPR014710 -
Vimu4g00644 696 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 62 690 - -
Vimu4g00644 696 MobiDBLite consensus disorder prediction 666 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00644 Vimu-Chr4 4877407 4881040 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00644 54 693 Ion Channels AT2G28260 76.719 0.0 1024
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00644 K05391 - gmx:100786868 1268.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00644 4 4877407 4881040 Vimu4g00644 4 4877407 4881040 ECH