Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00639 ATGAAGGACTCTTGGTTTTTCGACAATAACTTCAACGGTCTGTCAGATGATATTTTTGATGATGTCGTGGGTTTTTTTGATTTCCCACTGGAAGATGTAGAAGATGACTGGGATTCTCAATTTAAATGCCTTGAACACCAACATTCTGAGGTTTTTTCAGCGTCATCAAATGGGCTGTGTGCCAAAACACAAACTGAAAACCCCCAATTTGGAACGGAGTTCTCTGTTTCTGTGAGTATTCTGTCTGCAGTTATGGAATTTATTGGATTGGCAAAACAAAATTATTGGAAAATTTTCTACATATTATCTACTAACGACTCAAAATGGCCTCGAGATGGTACTATTATTCTGTTTGTAGTACTCAGCGTTTATGGACCTGAAGTTAGCACTTCATGGTTTTGTGACTATGTGAGGATTAAGTGTAATGGGATTTCCCCAATCAAACAGCTGGCAAAGGCTCCTGGACCAACATATGGAAAAACCATTCCCCTCAAGAATGTCACTTTCAATGGAAAAGATTTGCATCGATTCCGAACCTACAGCCCAGTTTCAGTTTTTGAAAGCAGCAGTTCTTCCTCTGTTGAGAATTCGAGCTTTGATCGACCTGTCATTCCAGTAAAGCGTGCTCGAAGTAAACGGCATCGTCGAATAAGTTTCAGTCCTCTATTTTCCATTCCTTTCGTCCAGGCTTTGCAAAAACAGCAAAGGACATCTGCCTCTGAATCAGATTTTGGAACAAATGTTGCTGGGAATATGTCAAACAAAGTAAAAAGCCACAAGAAAAAGGATTTGTCCCTGCTATCAGAAGATGTTGAGATAATGAGATCCTCACATCTGGTGTCAGATCCACCAAGGAAATGCATGCATTGTGAGGTGACAAAGACCCCACAATGGAGAGAGGGACCTATGGGTCCCAAAACACTGTGCAATGCTTGTGGTGTTCGGTACAGGTCTGGCCGCCTCTTTCCCGAATACCGGCCGGCAGCCAGCCCAACTTTTGTTGCATCATTGCACTCAAACTGTCACAAGAAGGTCGTGGAGATGAGAAGCAGAGTCCAGGAGGGTGTTAGGGGTTCTGTGTTTGCTTCATCAAATCTCCATGGAAATTCTGTAGGATAA 1119 0.4245 MKDSWFFDNNFNGLSDDIFDDVVGFFDFPLEDVEDDWDSQFKCLEHQHSEVFSASSNGLCAKTQTENPQFGTEFSVSVSILSAVMEFIGLAKQNYWKIFYILSTNDSKWPRDGTIILFVVLSVYGPEVSTSWFCDYVRIKCNGISPIKQLAKAPGPTYGKTIPLKNVTFNGKDLHRFRTYSPVSVFESSSSSSVENSSFDRPVIPVKRARSKRHRRISFSPLFSIPFVQALQKQQRTSASESDFGTNVAGNMSNKVKSHKKKDLSLLSEDVEIMRSSHLVSDPPRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVASLHSNCHKKVVEMRSRVQEGVRGSVFASSNLHGNSVG 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00639 372 FunFam GATA transcription factor 277 362 - -
Vimu4g00639 372 MobiDBLite consensus disorder prediction 238 254 - -
Vimu4g00639 372 ProSiteProfiles GATA-type zinc finger domain profile. 281 317 IPR000679 GO:0006355|GO:0043565
Vimu4g00639 372 Gene3D - 280 353 IPR013088 GO:0006355|GO:0008270
Vimu4g00639 372 SMART GATA_3 281 331 IPR000679 GO:0006355|GO:0043565
Vimu4g00639 372 ProSitePatterns GATA-type zinc finger domain. 287 312 IPR000679 GO:0006355|GO:0043565
Vimu4g00639 372 CDD ZnF_GATA 286 333 IPR000679 GO:0006355|GO:0043565
Vimu4g00639 372 MobiDBLite consensus disorder prediction 238 261 - -
Vimu4g00639 372 Pfam GATA zinc finger 287 320 IPR000679 GO:0006355|GO:0043565
Vimu4g00639 372 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 282 343 - -
Vimu4g00639 372 PANTHER GATA TRANSCRIPTION FACTOR 36 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00639 Vimu-Chr4 4799162 4802559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00639 150 361 C2C2-Gata Transcription Factor Family AT1G08010 39.301 8.58e-42 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vimu4g00639 GATA 4.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00639 - - gmx:100778675 346.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00639 4 4799162 4802559 Vimu4g00639 4 4799162 4802559 ECH
Vimu4g00639 4 4799162 4802559 Vimu5g01913 5 31021291 31024604 PCT