Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00637 ATGAAGGAAACCGAGAAGAGCTTGGATCCGCAGCTGTGGCACGCATGCGCCGGCGGCATGGTTCAGATGCCGCCGGTGAACTCCAAGGTATTCTACTTTCCTCAGGGGCATGCGGAACATGCGCAGTCCAACCTTGATTTTGGAGCCTCCAGGATTCCGATCCCGCCTCTCGTTCTCTGCCGCGTGGCGGCTGTTAAATTCCTTGCAGACCCCGAAACCGACGAGGTCTTCGCCAGGTTAAGGTTGGTTCCTCTCAGAAACACCGAGCTTGACCACGAAGAAAGCGACAAGGTTGACGGTAACGGCCCGGAGGGTTCAGAAAAGCCAGCGTCGTTCGCGAAGACGTTAACTCAATCGGACGCGAACAATGGTGGGGGATTCTCCGTGCCGAGATACTGCGCGGAGACCATTTTTCCGCGGCTGGATTACTCGGCGGAGCCGCCGGTGCAGACAGTGATCGCGAAAGACGTGCACGGCGAGGTGTGGAAGTTCCGGCACATTTACCGAGGGACGCCGCGTCGGCACTTACTTACCACCGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTGGTTGCTGGGGATTCTATAGTGTTTCTGCGGGCAGAGAATGGGGATCTCTGCGTTGGGATTCGTAGGGCGAAGAGAGGTGGTGTTGGTGGTCCCGAGGCGCCGTGTGGGTGGAGTTCTGGTGGTGGTGTTGGGATTGGGCCTTACGGAGCCTTTTCAGCTTTTTTGAGGGAGGAGAGCAAGGTGGTGAGGAATGGGTGTGGGAGGCCGAAAGTGAGTGGTGAGTCTGTGAGGGAGGCTATTACTTTGGCTGCTAACAACCAAACCTTTGAGGTTGTTTATTATCCTCGAGCCAACACTCCTGAGTTTTGTATTAGGACTTCTGCTGTGAAGGGTGCTATGAGGATTCAGTGGTGCTCTGGCTTGAGGTTTAAGATGCCCTTTGAGACTGAGGACTCTTCCAGGATAAGCTGGTTCATGGGCACCATAGCTTCTGTTCAGGTTCTTGATCCTATCCGCTGGCCCAATTCGCCTTGGAGGCTTCTTCAGGTTACGTGGGATGAACCAGATTTGCTCCATAATGTGAAGCGCGTAAGTCCATGGTTGGTTGAGTTGGTATCTAACATTCCAGTGATCCATCTGGCACCATTCTCTCCACCAAGGAAGAAGCTGAGGTTTCCACAACACCCAGAGTTTCCCCTTGATGTTCAATTTCCGATACCAACGTTTTCAGGCAACCCCTTTGGGTCTAGCACTAGCAGCCCCTTGTGTTGTCTATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTTTATCAGATCTCCACCTTAACCATAATAAGCTGCAGTTGGGGTTGCTTCCAACCAACGTTCGCCAGCTTGATTTGCAAAATGGGATTTCTAATGTCAACATCACCAACCATGGTAAGAGTAAAGAAAGTCTATCGTGCTTGCTGACCATGGGAAGTCCACGCAAGAGTTTGGAGAAATCTGATCAAGTGAAGACACACCAATTTTTACTTTTCGGTCAACCGATACTCACCGAGCAACAAATTTCTAGATCTTCTAGTGATGTCTTGTCTCAGAATTGCACCGCAACAGATGATGAGAACAAGGAGAAGAAGGAGATGGGATTCCTCAGTGACTCCCAGTCTTCAGTTTCCCCAGGAAAATCATCTTCCACCGCCGAGTTCTCTTGGCAACTCGGTTCTGACACCAGTCATTGCAAGGTTTTCATGGAGACAGAAGATGTGGGACGGACCCTTGACTTGTCCTGTCTTGGTTCTTATGATGAACTTTACATGAGACTGGCCACCATGTTTGGAATAGAACGCTCTGAGATGTTGAGTCATGTTCTCTACCGCGATGCAACCGGTGCTCTCAAACAAACAGGAGAAGAACCATTCAGTGAGTTCACGAAGACCGCTAAAAGATTGACAATTCTGAGTGATTCAAGCAGCAAAGATAGCAGAAGGGTTTGGATCACAGGAACTCGAAATGCTGAACATGGATTGGATGCTACTTCGAATAAGACAGGTCCTATGAGCATATTTGCTTAA 2088 0.5034 MKETEKSLDPQLWHACAGGMVQMPPVNSKVFYFPQGHAEHAQSNLDFGASRIPIPPLVLCRVAAVKFLADPETDEVFARLRLVPLRNTELDHEESDKVDGNGPEGSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGGVGGPEAPCGWSSGGGVGIGPYGAFSAFLREESKVVRNGCGRPKVSGESVREAITLAANNQTFEVVYYPRANTPEFCIRTSAVKGAMRIQWCSGLRFKMPFETEDSSRISWFMGTIASVQVLDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSNIPVIHLAPFSPPRKKLRFPQHPEFPLDVQFPIPTFSGNPFGSSTSSPLCCLSDNAPAGIQGARHAQIGISLSDLHLNHNKLQLGLLPTNVRQLDLQNGISNVNITNHGKSKESLSCLLTMGSPRKSLEKSDQVKTHQFLLFGQPILTEQQISRSSSDVLSQNCTATDDENKEKKEMGFLSDSQSSVSPGKSSSTAEFSWQLGSDTSHCKVFMETEDVGRTLDLSCLGSYDELYMRLATMFGIERSEMLSHVLYRDATGALKQTGEEPFSEFTKTAKRLTILSDSSSKDSRRVWITGTRNAEHGLDATSNKTGPMSIFA 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00637 695 FunFam Auxin response factor 110 214 - -
Vimu4g00637 695 Pfam Auxin response factor 269 352 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vimu4g00637 695 SUPERFAMILY DNA-binding pseudobarrel domain 107 213 IPR015300 -
Vimu4g00637 695 Gene3D - 110 214 IPR015300 -
Vimu4g00637 695 Gene3D - 579 666 - -
Vimu4g00637 695 Gene3D - 307 379 - -
Vimu4g00637 695 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Vimu4g00637 695 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Vimu4g00637 695 CDD B3_DNA 111 212 IPR003340 GO:0003677
Vimu4g00637 695 SMART B3_2 112 214 IPR003340 GO:0003677
Vimu4g00637 695 FunFam Auxin response factor 307 380 - -
Vimu4g00637 695 MobiDBLite consensus disorder prediction 90 110 - -
Vimu4g00637 695 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 662 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vimu4g00637 695 ProSiteProfiles PB1 domain profile. 582 662 IPR000270 GO:0005515
Vimu4g00637 695 MobiDBLite consensus disorder prediction 534 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00637 Vimu-Chr4 4789323 4792076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00637 4 664 B3 DNA Binding Superfamily AT4G30080 60.059 0.0 768
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vimu4g00637 B3 4.4e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00637 - - gmx:100778135 1255.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00637 4 4789323 4792076 Vimu4g00637 4 4789323 4792076 ECH
Vimu4g00637 4 4789323 4792076 Vimu5g01915 5 31053838 31056593 PCT