Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00629 ATGGCCAAAGACGTTGAGCAGGTCACGGAGCAACCCGAATACTCCGCCAAGGACTACCACGACCCGCCTCCGGCGCCGTTGTTCGACCCCGATGAGCTCACCAAGTGGTCCTTGTACAGAGCCGCCATAGCCGAATTCATAGCCACCCTCCTCTTCCTTTACATCACCGTCTTGACCATTATCGGCTACAAGAGACAGACCGACCCCAATATCTCCGGTACCAGCGAGTGCGACGGGGTAGGCATTTTGGGCATCGCTTGGGCCTTCGGTGGCATGATCTTCGTCCTCGTTTACTGCACCGCCGGCATCTCCGGGGGCCACATCAACCCTGCAGTGACGTTTGGGTTGTTCCTGGGGCGCAAGGTGTCGTTGGTGAGGGCGTTGCTGTACATGGTGGCACAGGTCGCCGGCGCAATCAGCGGTGCTGGGTTGGCGAAGGGGTTCCAAAAATCTTTCTACAACAGGTACGGTGGAGGGGCTAACTCTGTGAGCGTTGGCTACAACAAAGGCACTGCCGTGGGTGCCGAAATCATCGGTACCTTTGTTCTTGTCTACACCGTTTTCTCCGCCACCGATCCTAAGAGAAACGCTCGGGACTCTCATGTTCCTGTGCTGGCACCCCTTCCCATTGGGTTTGCCGTCTTCATGGTTCACTTGGCTACAATCCCTATCACTGGAACCGGCATTAACCCTGCAAGGAGTTTCGGACCAGCTGTGATCTTCAACAATGACAAAGTCTGGGACGACCAATGGATTTACTGGGTTGGACCGTTTGCTGGAGCTGCGGCGGCTGCATTCTACCATCAGTACATTCTGAGAGCTGCAGCTATAAAGGCCCTTGGATCCTTCAGGAGCAACGCATAA 864 0.5567 MAKDVEQVTEQPEYSAKDYHDPPPAPLFDPDELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQTDPNISGTSECDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYMVAQVAGAISGAGLAKGFQKSFYNRYGGGANSVSVGYNKGTAVGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGPAVIFNNDKVWDDQWIYWVGPFAGAAAAAFYHQYILRAAAIKALGSFRSNA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00629 287 ProSitePatterns MIP family signature. 107 115 IPR022357 -
Vimu4g00629 287 MobiDBLite consensus disorder prediction 1 17 - -
Vimu4g00629 287 PRINTS Major intrinsic protein family signature 89 113 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00629 287 PRINTS Major intrinsic protein family signature 251 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00629 287 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00629 287 PRINTS Major intrinsic protein family signature 175 193 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00629 287 PRINTS Major intrinsic protein family signature 126 145 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00629 287 PRINTS Major intrinsic protein family signature 211 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00629 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 276 IPR034294 -
Vimu4g00629 287 NCBIfam MIP family channel protein 44 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00629 287 SUPERFAMILY Aquaporin-like 32 273 IPR023271 -
Vimu4g00629 287 CDD MIP 40 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00629 287 MobiDBLite consensus disorder prediction 1 25 - -
Vimu4g00629 287 Gene3D Glycerol uptake facilitator protein. 25 287 IPR023271 -
Vimu4g00629 287 FunFam Probable aquaporin PIP1-2 25 287 - -
Vimu4g00629 287 Pfam Major intrinsic protein 32 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00629 Vimu-Chr4 4655849 4656989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00629 1 287 Major Intrinsic Protein MIP AT2G37170 77.778 6.80e-164 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00629 K09872 - gmx:732604 529.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00629 4 4655849 4656989 Vimu4g00629 4 4655849 4656989 ECH
Vimu6g02523 6 21985268 21987170 Vimu4g00629 4 4655849 4656989 ECH
Vimu4g00629 4 4655849 4656989 Vimu5g01928 5 31201638 31202069 PCT