Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00627 ATGATTGCAGCTGAGGCTTTGATCACTTTCAAGGGTTCGCTTGGAGGTCCACAGCAATTAGGATGCAGCATTGTGAAATATCCATGTCAAATGCAATGGCCTTGTCTTGACTGCTATAAACTAAAAGATCCAGGTGGAGTAACAACAAAGATAGATGGGAATAATGACATTCCAACACTTACACCTCTTCCAGAAACTCAAGATAGAAAACCAGGTGGAAGAAGGAGTTCTGCCATAATTGGTAGCGTTATTGCTGCCATAGTTGTCGTTGTAATCCTGGTGACTGTCTATATCTGCTTGATGCGTGTTAAAAAATCTATGAGGCAAACATCTGAGGTTGCTTCTTCTATGCCATCTCCCACCGTTGAGATGGGAAGAGTCAACACACAGCATGTCACTGCTTTCTCTCCACAAAACACAAGGCAGTTAACAATTTTGGAACTGGAACAAGCAACACAAAATTTCAGTCGTAATAATATCATTGGTGAAGGTGGATTTGGTGTTGTATACAAGGGCTTGCTTCAAGATGGTTCTATTGTGGCTATAAAAAGGCGTCTATTTGCTCTGACAAAAGATTTCGTCCTAAATGTGAAACAGATAGCTCATATTCACCACATCCATCTGGTCAAGCTCATAGGCTATTATGAAGATAGCCATCAACAATTACTTGTATATGAATATCTCCCTAACGGCAATGTAGGGAGTCACCTATATGATAGTGAAGGTTTACCTGTTGGAAGGTTAAACTTGTGGCGAAGGTTGTCTATTGCTTTAGGCGCATCCAAAGGAGTGGAACATCTTCACAGCTTGGTTCCTCCTTTGGTTCACACAAACTTTAGAACTAGCAATGTTCTGTTAGATGAAAATTTTACTGCCAAGGTTTCTGATTATGGATTCTGCAAACTGCAAACACAAGTTGATCAGGCAGGCTCGTCTTCAAATGTAGACTGTTTTCTTGACCCAGAGTTGAGCTTTCCACAAAACTTTTCGGAGAAGAGTGATGTATACAGTTTCGGGGTGTTCTTACTAGAGTTGATTTGTGGCTGTGAAGCACATAACAAAAACATGTTACACCCAGATGAAAATATAGCATTTCAGGTAAAAAATAGTGTTGACTTGGACAGATTTGTTGACATGACAATGGGATACAAAGAAAAACATGGTGCTAGACGAATTTTGATGTTGGCATTGCAGTGTGTGGATGCTACTTGTAGAAGACCATCAATGGCGCAAATTGTGCTAGAGCTGGAGCGGATTCAAAGAGAAATTGCTCCCATGTATTCTCAATTCAACGATGAGATTGGTGCCGTGACTCTTGGGAGTGAACTTTTTCAATGA 1338 0.4058 MIAAEALITFKGSLGGPQQLGCSIVKYPCQMQWPCLDCYKLKDPGGVTTKIDGNNDIPTLTPLPETQDRKPGGRRSSAIIGSVIAAIVVVVILVTVYICLMRVKKSMRQTSEVASSMPSPTVEMGRVNTQHVTAFSPQNTRQLTILELEQATQNFSRNNIIGEGGFGVVYKGLLQDGSIVAIKRRLFALTKDFVLNVKQIAHIHHIHLVKLIGYYEDSHQQLLVYEYLPNGNVGSHLYDSEGLPVGRLNLWRRLSIALGASKGVEHLHSLVPPLVHTNFRTSNVLLDENFTAKVSDYGFCKLQTQVDQAGSSSNVDCFLDPELSFPQNFSEKSDVYSFGVFLLELICGCEAHNKNMLHPDENIAFQVKNSVDLDRFVDMTMGYKEKHGARRILMLALQCVDATCRRPSMAQIVLELERIQREIAPMYSQFNDEIGAVTLGSELFQ 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00627 445 Pfam Protein tyrosine and serine/threonine kinase 158 415 IPR001245 GO:0004672|GO:0006468
Vimu4g00627 445 FunFam receptor-like serine/threonine-protein kinase NCRK 129 227 - -
Vimu4g00627 445 MobiDBLite consensus disorder prediction 52 74 - -
Vimu4g00627 445 ProSiteProfiles Protein kinase domain profile. 155 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00627 445 ProSitePatterns Protein kinases ATP-binding region signature. 161 183 IPR017441 GO:0005524
Vimu4g00627 445 SUPERFAMILY Protein kinase-like (PK-like) 134 424 IPR011009 -
Vimu4g00627 445 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 86 419 IPR047117 -
Vimu4g00627 445 Gene3D Phosphorylase Kinase; domain 1 117 227 - -
Vimu4g00627 445 Gene3D Transferase(Phosphotransferase) domain 1 228 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00627 Vimu-Chr4 4642692 4644870 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00627 76 419 Receptor kinase-like Gene Family AT1G79620 34.160 8.16e-54 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Vimu4g00627 PK_Tyr_Ser-Thr 7.5e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00627 - - gmx:100815066 746.888