Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00621 TTCCGACTTGTTGCTTTGCTTTGTCACCACGAAATGAGTGCTCAACAAAAAGAAACGGAAAATCATGACACGCTTTCGTCCAATCCAACGGTGGGTGATACAATGGGGGTAGCCGGTGAAACCTCGCATGGAAACAATGACTGGAAGCCAGAGAAAATTCAGTTCGAAATACCGACCACAACATCGGAAGACTGTTGTCGGGATTTTGTTGGAATAAGGATGCCACTCACGCCAAGTCCAACTCCTAGTCAGAAGAAAGTGAATTTTCTTGTGACTTCTCGCTCTGTGGATGCTCCCAGACCTTCTTCTTCTTCGGCTTCCAGAGGCAAATCATCCATGAGAAACATCTTGCCGAGGTTTGGCTTCAAGAATCGTCAGTCGCTTGATGTCGAAAAGGCTGTTACCGCAGCTTCAGAAGCTTCTTTTTCTGGCCATCAAGAAAAGTCCTCCATCGCTAGATCAGTGTCTCTCACCAAGATATTCACTCCTAAGATTAATAGAACGTCTTCGTTACCGGTAGAAGAAATTGGACGTGCAGACGTAGAATCTGCTCTGGCTGGAACTCTTGCTGCTTCTCCATACGGAAGAGAGACGCAGGGGATGATAGCTCGTTCTCGTTCAGTGCCTGTCAATAGCAAAGAAAAAGGCATAAGAAGAATGGATTCAGTTTTCCGCATCATTCCTTCCACTCCTCGCGTACATGAAGTCAATCAATCAACAAAGGATTCTGACAATGGTGGTGGTGAAGATATTGGCCAAGAGGAAGCGGTGTGCAGAATTTGTCTGGTTGATCTATGTGAAGGAGGTGAGACATTAAAGATGGAATGCAGCTGCAAAGGTGAACTGGCTCTGGCTCACCAAGAATGTGCTGTTAAATGGTTTAGTATCAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGAAGTTCGGAACCTCCCTGTCACTCTCTTACGGATCCGAAGTGTTCAAACCCAGAATACTGGAGTAAGGTCCGAGCAGGGAGATGATTTCAGGCATGTGTTCTTATTTTCTTATATAAACACTGGTACTAGTGTACCACAAAGAACAATTCTTAATTTGTCTGTTCAATTTGACAGGGTTTGGCAGGAACTCCCAGTGCTTGTTATTGTCAGCATGCTTGCCTACTTTTGTTTCCTTGAGCAGCTGTTGGTTGGAAAAATGGGAACCAGGGCAATTTTCGTCTCTCTTCCATTTTCATGTGTACTAGGCCTACTCTCCTCCGTGACATCAACGACCATGGTGAAGAGCAAGTTCATCTGGTTATATGCATCTGTCCAATTTCTTTCGGTGGTCCTATTCGCTCATATATTTTACCCCTTGGTTGGTAAGCATGCGGTTTTGTCGATCCTTCTTGCTACATTTGCCGGGTTTGGTGTTGTGATGAGTGGAAGTTCAATTGTTTTGGAGATTTCTAGATGGAGAAGAAGATGGCAAACTTTATCACAGCAGCAGCGTGGTTCTTCAGCAATGACACAAGAAGGGCTATCAAATAACTAA 1518 0.4473 FRLVALLCHHEMSAQQKETENHDTLSSNPTVGDTMGVAGETSHGNNDWKPEKIQFEIPTTTSEDCCRDFVGIRMPLTPSPTPSQKKVNFLVTSRSVDAPRPSSSSASRGKSSMRNILPRFGFKNRQSLDVEKAVTAASEASFSGHQEKSSIARSVSLTKIFTPKINRTSSLPVEEIGRADVESALAGTLAASPYGRETQGMIARSRSVPVNSKEKGIRRMDSVFRIIPSTPRVHEVNQSTKDSDNGGGEDIGQEEAVCRICLVDLCEGGETLKMECSCKGELALAHQECAVKWFSIKGNKTCDVCKEEVRNLPVTLLRIRSVQTQNTGVRSEQGDDFRHVFLFSYINTGTSVPQRTILNLSVQFDRVWQELPVLVIVSMLAYFCFLEQLLVGKMGTRAIFVSLPFSCVLGLLSSVTSTTMVKSKFIWLYASVQFLSVVLFAHIFYPLVGKHAVLSILLATFAGFGVVMSGSSIVLEISRWRRRWQTLSQQQRGSSAMTQEGLSNN 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00621 505 ProSiteProfiles Zinc finger RING-CH-type profile. 250 312 IPR011016 GO:0008270
Vimu4g00621 505 MobiDBLite consensus disorder prediction 93 112 - -
Vimu4g00621 505 SUPERFAMILY RING/U-box 254 309 - -
Vimu4g00621 505 CDD RING_CH-C4HC3_MARCH 258 306 - -
Vimu4g00621 505 MobiDBLite consensus disorder prediction 19 41 - -
Vimu4g00621 505 SMART ringv_2 257 306 IPR011016 GO:0008270
Vimu4g00621 505 MobiDBLite consensus disorder prediction 14 49 - -
Vimu4g00621 505 Pfam RING-variant domain 258 305 IPR011016 GO:0008270
Vimu4g00621 505 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 313 IPR013083 -
Vimu4g00621 505 PANTHER OS02G0165000 PROTEIN 18 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00621 Vimu-Chr4 4617534 4620605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00621 255 312 C3H Transcription Factor Family AT2G37950 47.458 4.77e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00621 - - gmx:100782610 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00621 4 4617534 4620605 Vimu4g00621 4 4617534 4620605 ECH
Vimu4g00621 4 4617534 4620605 Vimu5g01935 5 31237195 31242211 PCT