Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00610 ATGATGTCTGGTGAAGCAATAACTGTCCCTTCCAACCTCAGAGATTCCTCGGTTCAAGTCCACGACCCAATCTCAAACCCTAATCCTAACCCTAATCCAAACTCTTCGGTTAAGAGAAAAAGAAGCCTACCCGGAACACCAGGCAAGTTATTATGTCAATCTCCGTCTTTTTCTTGCATATTAAATCAATGGACGAATATAGCAGATCCGAATGCTGAAGTGATTGCTCTGTCGCCAAAGTCGCTGATGGCCACGAACCGGTTCGTATGCGAAGTGTGCAACAAGGGTTTTCAGAGAGACCAGAACCTGCAGCTGCATCGGCGAGGGCACAATCTGCCGTGGAAGCTGCGGCAAAGATCAAAGGAAGAGGTGAGGAAGAAGGTGTACGTGTGTCCGGAGAAGAGTTGCGTGCACCATGACCCTTGCAGAGCCTTGGGAGACCTCACTGGGATAAAGAAACACTTCAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGAAAAGTGCTCCAAGAAATACGCTGTTCAATCTGACTGGAAAGCCCATAACAAGATTTGTGGGACTAGACAGTACAAATGTGACTGTGGCACAATATTCTCCAGGAAGGACAGCTTTGTAACGCATAGAGCCTTTTGTGACGCTATGGTGGAACAAAGTGGGAGACTTCCGGCAATTTTATCAAACCTCGGAAACGATATTTTGATGAACGCGCAAGGCCCGAGACTAATGCCTCAGGGTCTACAACTACACGGGTTTCATTCAGATTTTGGTGGGCCAGGTTCAGAATCATACATGGGAAACTTTGCTGATGCTGAGCATGTTGAACATAAGCTAAGGTTGCCGATATGGCTAGACCAGACAAATCTTCAACTTAACCATCCTCTTGGCGTTGTTCCAGCCAATTCAAGTGTATTCTCAACTGGAACAACGTTGCCGGAAACAAACAACATGTTCGGGACATCGTCGTCACAGGCACAGTGGACAAATTACCGATACCCAGAAGCATCTTTTAGAAGTGCCAGTGTTTCTGTGCCTCATGGACTGAAGCTAGAGCAAGAAGAAAACAAAGGGGAGTTGTCGCATAGCGTGAGCTCTTTGTACCCAAGTCACATGGAATCTATTAGGATGGGTGCTAATTCACCTTTCGACAACTCTAACTTTGGCCTGTTAGACCCGAACATGTCAAGCACGTCAACCAACAATGTGGTAGAAATTCAGAAGATATTCAAGCAAGGAAACGAGGGTGAAAACTTCAGCCTCATGGGGAGTTCCCAGGCAAGAAGCAACATGGAAAGTGGGTTTTCCTTGAGTTGCAGGAAGAGTTTGGAGCATATGGTGATGCCTCGCATCGAAGAGTGGGAAAGTGGAGAAACAGAAATAATGGAGAAACAAGTACATTCAAGTTCAAACACTGAAACGAAAGATTTCATGGGTGTGGGAGATGGGTCAGTGATGAACCTGCAAAGGCAGTTCCTTGGACACTACTGA 1488 0.4644 MMSGEAITVPSNLRDSSVQVHDPISNPNPNPNPNSSVKRKRSLPGTPGKLLCQSPSFSCILNQWTNIADPNAEVIALSPKSLMATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLRQRSKEEVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHNKICGTRQYKCDCGTIFSRKDSFVTHRAFCDAMVEQSGRLPAILSNLGNDILMNAQGPRLMPQGLQLHGFHSDFGGPGSESYMGNFADAEHVEHKLRLPIWLDQTNLQLNHPLGVVPANSSVFSTGTTLPETNNMFGTSSSQAQWTNYRYPEASFRSASVSVPHGLKLEQEENKGELSHSVSSLYPSHMESIRMGANSPFDNSNFGLLDPNMSSTSTNNVVEIQKIFKQGNEGENFSLMGSSQARSNMESGFSLSCRKSLEHMVMPRIEEWESGETEIMEKQVHSSSNTETKDFMGVGDGSVMNLQRQFLGHY 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00610 495 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 483 IPR031140 -
Vimu4g00610 495 SMART c2h2final6 88 110 IPR013087 -
Vimu4g00610 495 SMART c2h2final6 129 159 IPR013087 -
Vimu4g00610 495 SMART c2h2final6 164 184 IPR013087 -
Vimu4g00610 495 FunFam protein indeterminate-domain 12-like 67 135 - -
Vimu4g00610 495 Pfam Zinc finger, C2H2 type 88 110 IPR013087 -
Vimu4g00610 495 Gene3D Classic Zinc Finger 142 220 - -
Vimu4g00610 495 Gene3D Classic Zinc Finger 68 139 - -
Vimu4g00610 495 MobiDBLite consensus disorder prediction 1 45 - -
Vimu4g00610 495 FunFam protein indeterminate-domain 5, chloroplastic-like 142 221 - -
Vimu4g00610 495 SUPERFAMILY beta-beta-alpha zinc fingers 87 184 IPR036236 -
Vimu4g00610 495 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 110 IPR013087 -
Vimu4g00610 495 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Vimu4g00610 495 MobiDBLite consensus disorder prediction 1 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00610 Vimu-Chr4 4510035 4511848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00610 25 221 IDZ Gene Family AT3G50700 72.589 3.57e-105 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu4g00610 zf-C2H2 0.0075 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00610 K25870 - gmx:100811687 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00610 4 4510035 4511848 Vimu4g00610 4 4510035 4511848 ECH
Vimu4g00610 4 4510035 4511848 Vimu5g01965 5 31449916 31452022 PCT