Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00609 ATGGAGGGAGATCAAATGGGCTCTGGTTACTCTTTTCCACCTGGCTTCAGATTCCACCCTTCTGATGAAGAACTCATAGTTCATTACTTGCGAAACAAAATCTGTTCACGTCCACTTCCAGCATCTATTATAGCTGAGATAGATCTCTACAAGTATAACCCGTGGGAGCTACCCAATAAGTCCTTGTTTGGAGAAGAGGAGTGGTATTTCTTTAGCCCAAGAGACAGAAAGTACCCAAATGGATTGAGACCAAACAGGGCAGCAGCCTCGGGATACTGGAAGGCAACAGGAACTGACAAGCCAATTCTTTCTTCCAGTGGATCAAAGCGCATAGGAGTGAAGAAAGCTCTGGTGTTTTATTCAGGTCGACCTCCTAAGGGATCTAAGACGGATTGGATCATGAATGAGTATAGATTGATTGATACAATTACCCAATCCCCCAGGCTAAAAGGCTCCATGCGGTTGGATGACTGGGTACTATGCCGGGTTCGACATAAAGGCTACTCTTCGAAGATATCAGGTGAAAATCAAGAGAATCCTAGTGAACTAAACCTGTCTGCAAAACTACCAAGGAGTGAAGGATATCCAACAAACATGAACTGTCAGGCTGACATGATCACTGAGTATCAATACAAAGACTATCAGATCATAGCCTCTATTCTTGTTGGTGCACCTGTATCTCCCACTGAAAACATGCCAAATATGAGCTTTAAGGGCTGCAAAGGCACCAATCTAGTTTCAGTTTTTGAAGATGGTTTAACTAAAGTGAATTCTCAAATGACATTTCCTTCTTTGGACAGCTACTTCAACCCACTGACAAGAAAATCCAATGAAGATGAACAGTATGGAAATCTCATCTCTTTTAACAGGAAGTTCAACGCTGAGGACAAAATGGACGAATCACCTAGCAGGGTGTTGGCCAGTAGAGAATTGAACTGCTATAACCAAAACCAGTCTGAAGATGACATTTTCAGCGGGAACCCACCAGACACTGGCATCAATTATCAAGAGCTTAACGATTTAGTCTTTACAGGAAGGTACCCTCAGTGA 1050 0.4286 MEGDQMGSGYSFPPGFRFHPSDEELIVHYLRNKICSRPLPASIIAEIDLYKYNPWELPNKSLFGEEEWYFFSPRDRKYPNGLRPNRAAASGYWKATGTDKPILSSSGSKRIGVKKALVFYSGRPPKGSKTDWIMNEYRLIDTITQSPRLKGSMRLDDWVLCRVRHKGYSSKISGENQENPSELNLSAKLPRSEGYPTNMNCQADMITEYQYKDYQIIASILVGAPVSPTENMPNMSFKGCKGTNLVSVFEDGLTKVNSQMTFPSLDSYFNPLTRKSNEDEQYGNLISFNRKFNAEDKMDESPSRVLASRELNCYNQNQSEDDIFSGNPPDTGINYQELNDLVFTGRYPQ 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00609 349 SUPERFAMILY NAC domain 9 166 IPR036093 GO:0003677|GO:0006355
Vimu4g00609 349 FunFam NAC domain-containing protein 72-like 21 171 - -
Vimu4g00609 349 ProSiteProfiles NAC domain profile. 12 166 IPR003441 GO:0003677|GO:0006355
Vimu4g00609 349 Pfam No apical meristem (NAM) protein 13 139 IPR003441 GO:0003677|GO:0006355
Vimu4g00609 349 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 263 - -
Vimu4g00609 349 Gene3D NAC domain 21 169 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00609 Vimu-Chr4 4492554 4495030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00609 5 177 NAC Transcription Factor Family AT1G69490 65.896 3.62e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu4g00609 NAM 2.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00609 - - vra:106759457 706.827