Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00608 ATGTCTGTCATCGACATTCTCTTCCGCGTCGATACCATTTGTCACAAATATGACAAATACGACATCGACAAGCAGCGCGAGCAAAACGCCTATGGCGACGACGCCTTTGCTCGCCTCTATGCAGCTGTCGAATCCAGCATTCAGACCGCTCTCGACAAATCGGAGGCTGCTTCCACGGAGACCAACAGGGCAGTTGCTGCGGCTTTGAATGCGGAGGTTCGTCGGACCAAGGGTAGACTCATGGACGAGATTCCTAGACTGCGCAAATTGGTGCATAAGAAGGTTAAAGGTCTCACAAAAGAGGATATGGCCATTCGTCAGGATCTTGTTCTGGCATTGCCCGAGAGAATCCAAGCAATACCTGATGGTATTTCTGGTGCTTCTCTTCAAACTGCAGGATGGACTGCTGACTCATCTCAGCCATATGTCAAGTTTGACTCAGAGGGACAACTTGATACTGAATATTTCCAACAAAGTGAAGAATCCAGTCAGTTCAGACAAGAGTATGAGATGCGCAGGAAGAAACAGGATGAAGGACTTGATATCATATCGGAGGGATTGGATACCTTGAAGGAACTGGCCCATGATATGAATGAGGAATTGGATCGGCAAGTTCCACTAATGGACGAAATTGACAAAAAGGTGGATAGGACAACAGCTGAACTGAGAAACACTAACGTGAAGCTGAAGAAAACTCTCAACGAGGTAACTGACATGATTAATCGCACTCTCCTTTCTGTGAAAACTTTCAAATTGCAAGTTTCAATTGAATTGCAATCCTTTGTTTCCTCTCCAGATAAGGGCTGTCACTGTAAATTTCCAACACTACATCATGGTTCAGCTGCTGGAGAATGGCAACATATACTTTACCAATGTGCTTTGTAA 885 0.452 MSVIDILFRVDTICHKYDKYDIDKQREQNAYGDDAFARLYAAVESSIQTALDKSEAASTETNRAVAAALNAEVRRTKGRLMDEIPRLRKLVHKKVKGLTKEDMAIRQDLVLALPERIQAIPDGISGASLQTAGWTADSSQPYVKFDSEGQLDTEYFQQSEESSQFRQEYEMRRKKQDEGLDIISEGLDTLKELAHDMNEELDRQVPLMDEIDKKVDRTTAELRNTNVKLKKTLNEVTDMINRTLLSVKTFKLQVSIELQSFVSSPDKGCHCKFPTLHHGSAAGEWQHILYQCAL 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00608 294 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Vimu4g00608 294 CDD SNARE_Qc 173 231 - -
Vimu4g00608 294 PANTHER SYNTAXIN 60 233 IPR045242 -
Vimu4g00608 294 Gene3D - 169 231 - -
Vimu4g00608 294 SMART tSNARE_6 165 232 IPR000727 -
Vimu4g00608 294 Coils Coil 208 235 - -
Vimu4g00608 294 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vimu4g00608 294 SUPERFAMILY SNARE fusion complex 163 231 - -
Vimu4g00608 294 FunFam Putative syntaxin-71-like 170 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00608 Vimu-Chr4 4489590 4492041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00608 1 236 SNARE and Associated Proteins AT3G09740 65.546 5.00e-115 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00608 K08506 - gmx:100777251 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00608 4 4489590 4492041 Vimu4g00608 4 4489590 4492041 ECH