Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00600 ATGAGTGTGTCGGATATCACACGCCTAGAAATCAAATCAGCCGGAAAAAGTTCTTACTTTCTGGATTTCCTTTTCTTAGACCCACTTGATTGCACCCTTCGCCTCCTTTATCCTCTCTTTCTTTCTCTCTTGTTTTTTATTCTCTTTGGTTCCCCCATTGACTCCCACTCCTCCACAAGAACCAACAACCATCACACTGGGGCGTTCATGGAAATTGATCTGAACTATGCAGTGACTGAGCCTGAGAAGACCGCGTCTTGCAATGGGGACTGTGACAAAGGTGCTGCTTGCGTTTCCTCTCTGTCCTCTCCTACTTGTTCATCTTCTGGTTCCTCCTCCGCACGTGTGTCCTCCTCTTATCTTGAGCTCTGGCACGCTTGTGCTGGCCCCCTCACTTCCCTCCCAAAGAAAGGGAATGTGGTGGTGTATTTTCCACAAGGGCACTTAGAACAAGCTTCATCTTTCTCTCTCTTTTCACCAATGGACATGCCAACCTATGATCTTCAGCCACAGATCTTCTGTAGAGTTGTCAATATTCAGTTACTTGCCAATAAGGAGAATGATGAGGTTTATACACAGGTTACTTTGCTTCCCCAGGCTGAGTTGGCAGGGATGTATTTGGAGGGAAAAGAGCTTGAGGAATTGGGAGCTGATGAAGAGGGAAATGAAACAACACCTACAAAATCAACTCCTCACATGTTCTGCAAAACACTCACAGCCTCAGACACCAGCACTCATGGGGGTTTTTCTGTCCCTCGCAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAAAGACCCTCTCAGGAGCTTGTTGCCAAGGACCTGCACAATGTGGAGTGGAAATTTCGACATATTTACAGAGAAAATCATTGTGATAATTTTTTCAGGTCAGCCAAGGAGGCATCTGCTCACTACTGGCTGGAGGGTGAAAATGGAGAATTGAGATTGGGAATCCGAAGAGCTGCTCGACCAAGAAATGGTCTTCCTGAATCAATTGTTGGTAGCCAGAATTGTTACCCCAATTGCCTTTCTTCTGTGGCCAATGCTATATCCTCCAAAAGCATGTTTCATGTTTTCTACAGTCCAAGAGCAAGTCATGCGGATTTTGTTGTGCCCTACCAAAAATATGTCAAAAGCATAAAGAATCCGGTGACCATTGGGACAAGATTCAAAATGAGATTTGAAATGGATGAATCTCCCGAGAGAAGGTGTACTAGTGGTATAGTGACTGGAATGAGTGATTTGGATCCCTATAAATGGCCTAAGTCAAGATGGAGGTGCTTGATGGTCAGATGGGATGAAGATATTGAGATTAATCATCAAGATAGAGTATCTCCTTGGGAGATCGATCCTTCTGCATCTCTCCCTCCGTTGAGCATTCAATCCTCCAGAAGGCTGAAGAAACTTAGGCCAGGTCTGCAGGGTGCTTCACCCAGTCACCTCATCACAGCAGGAGGCAGTGGGTTTATGGACTCTGAGGAGTCTCTAAGATCATCCAAGGTCTTGCAAGGTCAAGAAAAGTCAGGTTTTATGTCACTGTATTATGGATGTGACACAGTAACTAAGCAGCCAGAATTTGAGATCAGATCTCCAAGTCATCCAAATTTTGCATCATCAACTGGAGTGAGAAAGATTGCTGCTGGTGAGTTTATGAGGGTCCACCCTCCTAGTTATGCAGGCTTCACGGAACCTAACAGGTTTCAAAGGGTCTTGCAAAGTCAAGAAATATGTCAGTTGAGATCTCTGACAGGAAAGGTTGATTTGAACTTTGGGGCCTGGGGCAAACCCAGTGTCAGTTTCACAAATTACAACCTGCAACAGGCAACCAAACCCAACTTCCACTCTTTAGGGCCAGAAGTTATTCAAACTGCATATTTTCCTTATGGTGATATTCACAAAGCTGGCCAAGGTAGCGGCACCGGCATGTTGTGCTCTAAACCTACCCATTTCCAGCGAGAGAATGTTCCATTTAACTCTCCTTCCTCTCAGTCAGGGATCATGAGAAATGAAGTTGGACGAGCAGAAGTCACAATCCAAAATGAGCAGAAGCTGCAGGACAATATTTCTGGTGCTGCTTCTTTAGGGACAAACCTGAGGATTCCAAGTGATGAGAATTTCAACGGGAAGGTAAATGCTTGTAAACTATTTGGGTTTCCCTTGTCCGGGGAAGCCACCCCCCAAAATTTACAGAACTCAGCTAAAAGAAGTTGCACAAAGGTTCACAAGCAAGGTAGCTTAGTTGGAAGAGCCATTGATCTCTCAAGATTGAACAGCTACAGTGACCTGCTGATTGAACTAGAGAGACTATTCAGCATGGAAGGCCTTCTAAGAGATCCTAACAAGGGATGGAGAATCCTATACACTGACAGTGAAAATGACATCATGGTTGTGGGAGATGACCCGTGGCATGAGTTCTGCGAGGTGGTCTCGAAGATTCATATCCATACACAAGAAGAAGTTGAGAAGATGACAATTGGGATGATGAATGATGATACCCAGAGTTGTTTGGAACAGGCACCAGTGATGATAGAGGCTTCAAAGTCTTCTTCTGTGGGTCAGCCAGATTCTTCTCCGACAGTGGTTAGAATCTAG 2604 0.4501 MSVSDITRLEIKSAGKSSYFLDFLFLDPLDCTLRLLYPLFLSLLFFILFGSPIDSHSSTRTNNHHTGAFMEIDLNYAVTEPEKTASCNGDCDKGAACVSSLSSPTCSSSGSSSARVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQASSFSLFSPMDMPTYDLQPQIFCRVVNIQLLANKENDEVYTQVTLLPQAELAGMYLEGKELEELGADEEGNETTPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHNVEWKFRHIYRENHCDNFFRSAKEASAHYWLEGENGELRLGIRRAARPRNGLPESIVGSQNCYPNCLSSVANAISSKSMFHVFYSPRASHADFVVPYQKYVKSIKNPVTIGTRFKMRFEMDESPERRCTSGIVTGMSDLDPYKWPKSRWRCLMVRWDEDIEINHQDRVSPWEIDPSASLPPLSIQSSRRLKKLRPGLQGASPSHLITAGGSGFMDSEESLRSSKVLQGQEKSGFMSLYYGCDTVTKQPEFEIRSPSHPNFASSTGVRKIAAGEFMRVHPPSYAGFTEPNRFQRVLQSQEICQLRSLTGKVDLNFGAWGKPSVSFTNYNLQQATKPNFHSLGPEVIQTAYFPYGDIHKAGQGSGTGMLCSKPTHFQRENVPFNSPSSQSGIMRNEVGRAEVTIQNEQKLQDNISGAASLGTNLRIPSDENFNGKVNACKLFGFPLSGEATPQNLQNSAKRSCTKVHKQGSLVGRAIDLSRLNSYSDLLIELERLFSMEGLLRDPNKGWRILYTDSENDIMVVGDDPWHEFCEVVSKIHIHTQEEVEKMTIGMMNDDTQSCLEQAPVMIEASKSSSVGQPDSSPTVVRI 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00600 867 ProSiteProfiles PB1 domain profile. 739 821 IPR000270 GO:0005515
Vimu4g00600 867 Pfam Auxin response factor 350 432 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vimu4g00600 867 Gene3D - 232 325 IPR015300 -
Vimu4g00600 867 CDD B3_DNA 232 324 IPR003340 GO:0003677
Vimu4g00600 867 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 119 828 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vimu4g00600 867 Pfam AUX/IAA family 734 823 IPR033389 -
Vimu4g00600 867 SUPERFAMILY CAD & PB1 domains 742 818 - -
Vimu4g00600 867 Pfam B3 DNA binding domain 234 301 IPR003340 GO:0003677
Vimu4g00600 867 Gene3D - 388 460 - -
Vimu4g00600 867 FunFam Auxin response factor 387 460 - -
Vimu4g00600 867 Gene3D - 735 828 - -
Vimu4g00600 867 SMART B3_2 234 326 IPR003340 GO:0003677
Vimu4g00600 867 SUPERFAMILY DNA-binding pseudobarrel domain 225 295 IPR015300 -
Vimu4g00600 867 FunFam Auxin response factor 734 828 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00600 Vimu-Chr4 4429685 4445332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00600 116 867 B3 DNA Binding Superfamily AT5G60450 56.697 0.0 788
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vimu4g00600 AUX_IAA 9.6e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00600 - - gmx:100812909 1354.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00600 4 4429685 4445332 Vimu4g00600 4 4429685 4445332 ECH
Vimu4g00600 4 4429685 4445332 Vimu5g01970 5 31516021 31521051 PCT