Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00595 ATGGAGAGTGACGCAAACACCCTCACTTCCTCTCCCACATTCTCTCACTCCTCTAATACCCTTTCTTCTTCTTCCCCTCCCCAAGTTGTCATGACCCCTTGTGCTGCATGCAAAATCCTTAGACGAAGATGTGCTGAGAAATGTGTGCTGGCACCTTATTTCCCTCCCACCGAACCCGCCAAGTTCACCATTGCTCACCGAGTCTTCGGTGCCAGCAACATCATCAAGTTCTTACAGGAACTTCCAGAGGGTCAGAGAGCTGATGCAGTGGCGAGCATGGTTTACGAGGCTGGTGCAAGAATAAGAGACCCTGTATATGGATGTGCAGGTGCAATTTGCCAGCTCCAAAAGCAAGTGAATGAACTTCAAGCACAGTTAGCAAAGGCACAAGCTGAGGTTGTAAACATGCAATTCCAACAAGCCAATCTCGTGGCTCTAATTTGCATGGAAATGTCACAGACTCCACAGGAATCACCCCAACAATCCCTTGACAATTTCATCGCGAGTCCTTCCCACAGCAGTGGCTATCAGAACAATCTCAGTTTCTTTGAGGATAACACCAACCTAAACTCTTTGTGGGAGCCTCTTTGGACATGA 597 0.4807 MESDANTLTSSPTFSHSSNTLSSSSPPQVVMTPCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPEGQRADAVASMVYEAGARIRDPVYGCAGAICQLQKQVNELQAQLAKAQAEVVNMQFQQANLVALICMEMSQTPQESPQQSLDNFIASPSHSSGYQNNLSFFEDNTNLNSLWEPLWT 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00595 198 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 32 160 - -
Vimu4g00595 198 ProSiteProfiles LOB domain profile. 32 133 IPR004883 -
Vimu4g00595 198 MobiDBLite consensus disorder prediction 1 28 - -
Vimu4g00595 198 Coils Coil 112 139 - -
Vimu4g00595 198 Pfam Lateral organ boundaries (LOB) domain 33 130 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00595 Vimu-Chr4 4397270 4397950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00595 1 198 AS2 family AT1G07900 62.189 1.26e-81 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu4g00595 LOB 4.2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00595 - - gmx:100819336 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00595 4 4397270 4397950 Vimu4g00595 4 4397270 4397950 ECH
Vimu4g00595 4 4397270 4397950 Vimu5g01992 5 31713993 31715620 PCT