Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00587 TTGACAGGGCTCAGATCTAGAGGAAGATCCATTTTCTCGATCGAGAAAATGGAGCAGTTCGTCGAAAACTTGCCGCCGATGGATCTGATGCGATCTGAGAAGATGACCTTTGTTCAGCTTATCATTCCGGCCGAGTCCGCACACCGCGCCATCTCCTATTTAGGCGAACTCGGTCTTCTCCAATTCCGCGACGTAAGTTCTCTTCCAGATCCGACCAAGCTCTTTCGAGATTCCTTGCCATTTCCTCTTTTTTTTGCACTTTTCTTCTTTGCATTGCTGCTCGAGTTAAATGCTGATAAAAGTCCCTTCCAGAGAACATTTGTTAATCAGGTCAAACGATGTGCAGAAATGTCAAGAAAACTAAGATTCTTCAAGGATCAAATCAGTAAAGCTGGCCTCTTGTCTTCTTCTCGGACTGCATTGCAACCAGATATTGACTTGGAGGATTTGGAGATGCAACTTGCTGAACATGAACATGAGCTGATTGAAATGAACTCTAATAGTGACAAACTCCGGCAATCATATAATGAACTCTTGGAATTCAAGATTGTATTACAAAAGGCATGTGGCTTTCTTGTTTCAAGTCATAACCTTGCACTTTCAGATGAAAGAGAACTACAAGAGAATGTATTTTCAAATGATGCCTATGTAGAGACAGCATCTTTGCTTGAACAGGAAATGAGGCCTCAGTCATCAAATTCGTCTGGTTTAAGATTTATCAGTGGGATAATCTGTAAATCCAAGGTTCTTAGGTTTGAAAGAATGTTGTTTCGTGCTACAAGAGGCAATATGCTATTCAACCAGGAACCAGCTGATGAACAAATCATGGATCCTGTTTCAACTGAGATGATTGAAAAAACAGTGTTTGTCGTGTTTTTCTCTGGGGAACAGGCAAGAACAAAGATTCTGAAAATTTGTGAGGCATTCGGTGCAAATTGTTATCCTGTTCCTGAAGATATTAGCAAGCAGAGGCAAATAACTAGAGAGGTTTCATCCCGTCTTACAGACTTAGAGGCAACTTTGGAAGCTGGGATTAGGCACCGGAACAAGGCTCTAGCTTCTGTTGCAGACCATCTAGGGAAATGGATGAACATGGTAAGAAGAGAGAAGGCTGTGTACGATACACTGAACATGTTAAACTTCGATGTTACAAAAAAATGTCTTGTGGGAGAGGGCTGGTGCCCTCTGCTTGCCAAAACACAGATGCAGGAGGCACTGCAACGTGCAACTTTTGATAGCAATTCTCAAGTTGGCATAATCTTCCATCCACTAGAGGCAGTGGAATCACCACCTACATACTTTCGGACCAACACTTTCACAAATCCATATCAAGAAATTGTTGATGCATACGGTGTTGCAAGATACCAAGAGGCGAATCCTGCAGTTTACACAACTATTATATTCCCTTTCCTATTTGCTTTGATGTTTGGGGACTGGGGTCATGGAATTTGCCTGTTGCTAGGAGCATTGGTTCTTATAGCACGTGAAAACAAGCTAAGCACACAGAAACTTGGAAGCTTTATGGAGATGCTGTTTGGTGGGCGCTATGTGCTTCTTCTAATGGCTCTATTTTCAATCTATTGTGGCTTAATCTACAATGAATTCTTCTCTGTCCCTTTCCACATATTTGGTGCATCTGCATACAAATGCCGCGATAGTTCTTGCAGGGATGCACATACTATTGGTTTAGTCAAATACCAAGATCCATACCCATTTGGTGTGGATCCCAGCTGGCGTGGAAGTCGTTCAGAATTGCCTTTCCTGAATTCTTTGAAGATGAAGATGTCCATTTTGTTTGGTGTCGCACATATGAACTTAGGAATTATTTTAAGTTATTTTAATGCACGGTTCTTTGGAAGCTCATTGGATATAAGGTACCAGTTTGTGCCACAGATGATTTTCCTTAACTGTCTATTTGGGTATCTTTCCCTTCTCATTGTTGTTAAGTGGTGTACGGGCTCTCAAGCAGACCTTTATCATGTAATGATATACATGTTTTTAAGCCCCACGGACAATCTTGGCGAGAATCAGTTGTTCTGGGGCCAAAGACCACTTCAAATTGTGTTATTGCTTTTGGCTGTAATTGCAGTTCCATGGATGCTCTTTCCAAAACCTTTTATATTAAAGAAGCTTCATACTGAGAGATTTCAAGGTCGTAGTTATGGCTTACTGAACACTTCTGAGGTGGATCTTGAGGCGGAGCCTGATTCTGCCAGACAACATCATGAAGAATTCAATTTCAGTGAAGTCTTTGTTCACCAAATGATCCATGCCATTGAATTTGTTCTAGGTTCTGTTTCTAATACAGCATCATATCTTCGTCTTTGGGCATTAAGTTTGGCTCACTCTGAACTTTCTACTGTTTTCTATGAGAAAGTCCTGCTTTTAGCTTGGGGATATGACAATCTTATCATTCGGTTGGTGGGGCTCACCGTTTTTTCCTTTGCAACTGCCTTTATACTACTAATGATGGAGAGTCTTAGTGCTTTTCTTCATGCGCTGCGGCTTCACTGGGTAGAATTTCAAAATAAATTCTACCATGGCGATGGCTATAAGTTCAGACCTTTTTCATTTGCTTCCTTAACAGAGGAAGATGATTGA 2601 0.4125 MTGLRSRGRSIFSIEKMEQFVENLPPMDLMRSEKMTFVQLIIPAESAHRAISYLGELGLLQFRDVSSLPDPTKLFRDSLPFPLFFALFFFALLLELNADKSPFQRTFVNQVKRCAEMSRKLRFFKDQISKAGLLSSSRTALQPDIDLEDLEMQLAEHEHELIEMNSNSDKLRQSYNELLEFKIVLQKACGFLVSSHNLALSDERELQENVFSNDAYVETASLLEQEMRPQSSNSSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQEPADEQIMDPVSTEMIEKTVFVVFFSGEQARTKILKICEAFGANCYPVPEDISKQRQITREVSSRLTDLEATLEAGIRHRNKALASVADHLGKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPLLAKTQMQEALQRATFDSNSQVGIIFHPLEAVESPPTYFRTNTFTNPYQEIVDAYGVARYQEANPAVYTTIIFPFLFALMFGDWGHGICLLLGALVLIARENKLSTQKLGSFMEMLFGGRYVLLLMALFSIYCGLIYNEFFSVPFHIFGASAYKCRDSSCRDAHTIGLVKYQDPYPFGVDPSWRGSRSELPFLNSLKMKMSILFGVAHMNLGIILSYFNARFFGSSLDIRYQFVPQMIFLNCLFGYLSLLIVVKWCTGSQADLYHVMIYMFLSPTDNLGENQLFWGQRPLQIVLLLLAVIAVPWMLFPKPFILKKLHTERFQGRSYGLLNTSEVDLEAEPDSARQHHEEFNFSEVFVHQMIHAIEFVLGSVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLIIRLVGLTVFSFATAFILLMMESLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFASLTEEDD 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00587 866 PIRSF ATP6V0A1 25 75 IPR026028 GO:0000220|GO:0046961
Vimu4g00587 866 PIRSF ATP6V0A1 89 866 IPR026028 GO:0000220|GO:0046961
Vimu4g00587 866 PANTHER VACUOLAR PROTON ATPASES 29 865 IPR002490 GO:0033179|GO:0046961|GO:1902600
Vimu4g00587 866 Coils Coil 147 174 - -
Vimu4g00587 866 Pfam V-type ATPase 116kDa subunit family 95 858 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00587 Vimu-Chr4 4319757 4329283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00587 17 859 Primary Pumps ATPases(2) AT2G28520 77.660 0.0 1353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00587 K02154 - gmx:100793301 1553.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00587 4 4319757 4329283 Vimu4g00587 4 4319757 4329283 ECH
Vimu4g00587 4 4319757 4329283 Vimu5g01999 5 31792140 31803209 PCT