LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu4g00580	ATGTTGGATCTTAATCTGAATGCCGACTCGACTCAGAGCCAAGACTCGGTGATGCTGTTGGACAAGTTTCCCGAAGCTTCTTCGGGAACTTCGAATTCCTCCGTGGTGAATGCGGAAGGGTCGAGCAACGAGGACTCGTGTTCGACACGCGCCGGTAACGTGTTCACCTTCAATTTCGGAATCCTTAAGGTCGAAGGTGCGGACGACGTCGTCGTCTCAGCGACGAAGGAGCTGTTTCCGGCGAGCGCGGAGAATTGGCAAGGACAGAGTTCGACGTCGTCTTTTCAGGCTAGGAAGAGTTTGGTGGATCTCTCGCTGGATCGCCAAAACGGCGAGGTGAAGGTGGTTCAGGTTCAGCAACAACCTCAGGTGAAGAAGAGTAGGAGAGGTCCACGGTCTCGGAGCTCTCAGTACAGAGGAGTCACCTTCTACAGAAGGACCGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGCGGATTTGACACCGCTCATGCCGCAGCCAGGGCCTATGATCGAGCTGCAATTAAGTTCAGGGGACTTGATGCGGATATCAATTTTAATCTTGTTGATTATGAGGAGGATTTAAAACAGATGAAAAATCTTTCCAAGGAGGAGTTCGTGCACATACTCCGCCGTCACAGTACCGGTTTCTCAAGGGGGAGTTCAAAATACCGGGGAGTGACACTTCACAAATGTGGCCGGTGGGAAGCTCGAATGGGACAATTCCTTGGAAAAAAGTATATATATCTTGGGCTTTTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCAATCAAGTGCAATGGAAGAGAGGCAGTGACTAACTTTGAGCCAAGTACATATGACAGCGAAATGAAACCTGAAGCTATCAATGAAGGTGGCAATCACGATCTTGATCTCAATCTGGGCATAGCAACTCCAGGACATGGTCCCAAAGAAAACATAGGTCATCTTCAGTTCCAACAAGTCCCATACAGCACGCACCCCGGAAGAATTTCAAGGATGGAGACTAATTTTAGTCCAGTTATTGGTGATCCTTCTTTGAAAAGGCATGTTGTAACTGAAGAGCGTCCTTCTGTATGGAACGCTGCACATTACACTTTCTTTCCCAATCTGGAAAGAGCAGAGAGAATCGGCATAGATCCTTCAAAGGGAGTCCCGAACTGGGCCTGGCAAACACATGGCCAGGTTACTGCCAGCCCAGTACCACCGTTCTCTACTGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCACCGAATGCCATCTTTCCAACAAAATCAGTGAACTCAATTCCGCAGAACCTCTGTTTCACTTCAGCCAGTGCACCAGGTAGCAATACACCTCAATTCTATTACGAGGTCAAGTCCACTCAGGCACCACCCCATCCTTTCTAG	1428	0.4888	MLDLNLNADSTQSQDSVMLLDKFPEASSGTSNSSVVNAEGSSNEDSCSTRAGNVFTFNFGILKVEGADDVVVSATKELFPASAENWQGQSSTSSFQARKSLVDLSLDRQNGEVKVVQVQQQPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVDYEEDLKQMKNLSKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYDSEMKPEAINEGGNHDLDLNLGIATPGHGPKENIGHLQFQQVPYSTHPGRISRMETNFSPVIGDPSLKRHVVTEERPSVWNAAHYTFFPNLERAERIGIDPSKGVPNWAWQTHGQVTASPVPPFSTAASSGFSISATFPPNAIFPTKSVNSIPQNLCFTSASAPGSNTPQFYYEVKSTQAPPHPF	475

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu4g00580	475	PRINTS	Ethylene responsive element binding protein signature	268	288	IPR001471	GO:0003700\|GO:0006355
	Vimu4g00580	475	PRINTS	Ethylene responsive element binding protein signature	230	241	IPR001471	GO:0003700\|GO:0006355
	Vimu4g00580	475	SMART	rav1_2	229	292	IPR001471	GO:0003700\|GO:0006355
	Vimu4g00580	475	SMART	rav1_2	137	199	IPR001471	GO:0003700\|GO:0006355
	Vimu4g00580	475	Pfam	AP2 domain	228	278	IPR001471	GO:0003700\|GO:0006355
	Vimu4g00580	475	Pfam	AP2 domain	137	185	IPR001471	GO:0003700\|GO:0006355
	Vimu4g00580	475	SUPERFAMILY	DNA-binding domain	136	193	IPR016177	GO:0003677
	Vimu4g00580	475	CDD	AP2	137	192	IPR001471	GO:0003700\|GO:0006355
	Vimu4g00580	475	ProSiteProfiles	AP2/ERF domain profile.	229	286	IPR001471	GO:0003700\|GO:0006355
	Vimu4g00580	475	ProSiteProfiles	AP2/ERF domain profile.	137	193	IPR001471	GO:0003700\|GO:0006355
	Vimu4g00580	475	MobiDBLite	consensus disorder prediction	26	47	-	-
	Vimu4g00580	475	FunFam	AP2-like ethylene-responsive transcription factor	228	288	-	-
	Vimu4g00580	475	CDD	AP2	228	288	IPR001471	GO:0003700\|GO:0006355
	Vimu4g00580	475	MobiDBLite	consensus disorder prediction	115	138	-	-
	Vimu4g00580	475	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	79	317	-	-
	Vimu4g00580	475	FunFam	AP2-like ethylene-responsive transcription factor	136	195	-	-
	Vimu4g00580	475	Gene3D	AP2/ERF domain	228	287	IPR036955	GO:0003700\|GO:0006355
	Vimu4g00580	475	Gene3D	AP2/ERF domain	136	195	IPR036955	GO:0003700\|GO:0006355
	Vimu4g00580	475	SUPERFAMILY	DNA-binding domain	228	287	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu4g00580	Vimu-Chr4	4266892	4270216	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu4g00580	74	312	AP2-EREBP Transcription Factor Family	AT4G36920	68.254	4.80e-96	295

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-AP2	Vimu4g00580		AP2	2.8e-09	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu4g00580	K09284		-	gmx:100777102	818.92

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu4g00580	4	4266892	4270216	Vimu4g00580	4	4266892	4270216	ECH
	Vimu4g00580	4	4266892	4270216	Vimu5g02004	5	31878717	31882030	PCT