Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00575 ATGGGTTGCTTTAGTTGCACGGCCAAACCAACCAAAAAATCCAACAACGTTAATCGCACCCAGAAGCATATTGCTGCTGTTGTCAAAATTAATTTGAAAGTGAATGGTAAAAGTGAAGATAATCATCGAAAGCCTGATCAGCTATCAGTGGACGTGAAGAATTTGAATTTACAAGAGGTTTCTGATGAGGTAAACGTTAGAAGTTACCGAGCACAGACATTTACTTTTGACGAGCTTGCAGCTGCAACAAGGAAATTTAGGCCAGATTGCTTTCTGGGCGAAGGAGGGTTTGGCAAGGTTTACAAGGGGTGCATAGAGAAATTAAATCAGGTTGTAGCAGTAAAGCAACTAGACCCTTATGGGCATCAAGGAATTAGGGAATTTGTTGTTGAAGTATTGACATTGAGTTTGGCAGATCACCCTAATTTGGGAGAGCAGAGGCTATTGGTTTATGAGTACATGCCATTGGGATCTTTGGAGAACCGTTTGCATGATCTTCCTCGTAGCAGAAAAGCACTTGATTGGAACACGAGAATAAAAATTGCAGCTGGTGCAGCTAGAGGGTTAGAGTATTTGCATGATAAAATGAAGCCTCCTGTCATATACCGTGACTTGAAGTGCTCCAATATTTTATTAGGTGAGGATTATCATCCCAAGTTATCAGATTTTGGGTTGGCAAAAGTAGGACCAAGTGGTGATAAGACCCATGTTTCAACAAGAGTTATGGGAACATATGGCTATTGTGCACCAGATTATGCAATGACGGGTCAATTGACGTTCAAGTCTGACATTTATAGCTTTGGAGTTGTTCTTTTGGAGATCATCACAGGCAGAAAGGCCATTGACCACATGAAACCTCCTAAAGAACAAAATCTAGTTGCATGGGCAAAACCTTTGTTCAAAGACAGAAAAAGATTCTGTGATATGGTTGACCCATTGCTTGAAGGTCGGTATCCAGTAAGAGGTTTGTACCAAGTTCTTGCTATTGCTGCCATGTGTGTTCAAGAACAACCTAGTATGCGGCCTGTCATAGCCGATGTGGTTACAGCTCTAAATTACCTTGAATCCCAGAAATACGATCCCCAAATTCATCTAATTCAAAGCTCTAGAAATGGTTTCTATTCTTCAAGAGCAAGAAGCCAAAATCGTAGACCAGCTGGCTATGGCTCTGAGCCAAGACCGTGCAAAGTTGGTCATAAACTACCTGTTAGTGATGGCAATAGTAGTAGTTTTTCGGAGACAGAAAGCTATATAAAGGGTCTATCTTCTCCAAGAACACGAAGTGAAGGTCATCAACATTTTGATAGAAATAATGATTCCGGGACAGACAGTTCTGCAGATTAG 1344 0.4107 MGCFSCTAKPTKKSNNVNRTQKHIAAVVKINLKVNGKSEDNHRKPDQLSVDVKNLNLQEVSDEVNVRSYRAQTFTFDELAAATRKFRPDCFLGEGGFGKVYKGCIEKLNQVVAVKQLDPYGHQGIREFVVEVLTLSLADHPNLGEQRLLVYEYMPLGSLENRLHDLPRSRKALDWNTRIKIAAGAARGLEYLHDKMKPPVIYRDLKCSNILLGEDYHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLEIITGRKAIDHMKPPKEQNLVAWAKPLFKDRKRFCDMVDPLLEGRYPVRGLYQVLAIAAMCVQEQPSMRPVIADVVTALNYLESQKYDPQIHLIQSSRNGFYSSRARSQNRRPAGYGSEPRPCKVGHKLPVSDGNSSSFSETESYIKGLSSPRTRSEGHQHFDRNNDSGTDSSAD 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00575 447 Gene3D Phosphorylase Kinase; domain 1 54 153 - -
Vimu4g00575 447 SMART serkin_6 86 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00575 447 ProSiteProfiles Protein kinase domain profile. 86 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00575 447 Pfam Protein tyrosine and serine/threonine kinase 92 349 IPR001245 GO:0004672|GO:0006468
Vimu4g00575 447 MobiDBLite consensus disorder prediction 374 447 - -
Vimu4g00575 447 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524
Vimu4g00575 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Vimu4g00575 447 PANTHER OS07G0668900 PROTEIN 3 362 - -
Vimu4g00575 447 FunFam Serine/threonine-protein kinase PBS1 154 369 - -
Vimu4g00575 447 Gene3D Transferase(Phosphotransferase) domain 1 154 372 - -
Vimu4g00575 447 MobiDBLite consensus disorder prediction 426 440 - -
Vimu4g00575 447 SUPERFAMILY Protein kinase-like (PK-like) 72 376 IPR011009 -
Vimu4g00575 447 MobiDBLite consensus disorder prediction 403 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00575 Vimu-Chr4 4186266 4189138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00575 1 354 Glycoside Hydrolase AT3G07070 54.821 6.18e-134 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vimu4g00575 PK_Tyr_Ser-Thr 2.7e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00575 - - gmx:100794680 669.077