Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu4g00575 | ATGGGTTGCTTTAGTTGCACGGCCAAACCAACCAAAAAATCCAACAACGTTAATCGCACCCAGAAGCATATTGCTGCTGTTGTCAAAATTAATTTGAAAGTGAATGGTAAAAGTGAAGATAATCATCGAAAGCCTGATCAGCTATCAGTGGACGTGAAGAATTTGAATTTACAAGAGGTTTCTGATGAGGTAAACGTTAGAAGTTACCGAGCACAGACATTTACTTTTGACGAGCTTGCAGCTGCAACAAGGAAATTTAGGCCAGATTGCTTTCTGGGCGAAGGAGGGTTTGGCAAGGTTTACAAGGGGTGCATAGAGAAATTAAATCAGGTTGTAGCAGTAAAGCAACTAGACCCTTATGGGCATCAAGGAATTAGGGAATTTGTTGTTGAAGTATTGACATTGAGTTTGGCAGATCACCCTAATTTGGGAGAGCAGAGGCTATTGGTTTATGAGTACATGCCATTGGGATCTTTGGAGAACCGTTTGCATGATCTTCCTCGTAGCAGAAAAGCACTTGATTGGAACACGAGAATAAAAATTGCAGCTGGTGCAGCTAGAGGGTTAGAGTATTTGCATGATAAAATGAAGCCTCCTGTCATATACCGTGACTTGAAGTGCTCCAATATTTTATTAGGTGAGGATTATCATCCCAAGTTATCAGATTTTGGGTTGGCAAAAGTAGGACCAAGTGGTGATAAGACCCATGTTTCAACAAGAGTTATGGGAACATATGGCTATTGTGCACCAGATTATGCAATGACGGGTCAATTGACGTTCAAGTCTGACATTTATAGCTTTGGAGTTGTTCTTTTGGAGATCATCACAGGCAGAAAGGCCATTGACCACATGAAACCTCCTAAAGAACAAAATCTAGTTGCATGGGCAAAACCTTTGTTCAAAGACAGAAAAAGATTCTGTGATATGGTTGACCCATTGCTTGAAGGTCGGTATCCAGTAAGAGGTTTGTACCAAGTTCTTGCTATTGCTGCCATGTGTGTTCAAGAACAACCTAGTATGCGGCCTGTCATAGCCGATGTGGTTACAGCTCTAAATTACCTTGAATCCCAGAAATACGATCCCCAAATTCATCTAATTCAAAGCTCTAGAAATGGTTTCTATTCTTCAAGAGCAAGAAGCCAAAATCGTAGACCAGCTGGCTATGGCTCTGAGCCAAGACCGTGCAAAGTTGGTCATAAACTACCTGTTAGTGATGGCAATAGTAGTAGTTTTTCGGAGACAGAAAGCTATATAAAGGGTCTATCTTCTCCAAGAACACGAAGTGAAGGTCATCAACATTTTGATAGAAATAATGATTCCGGGACAGACAGTTCTGCAGATTAG | 1344 | 0.4107 | MGCFSCTAKPTKKSNNVNRTQKHIAAVVKINLKVNGKSEDNHRKPDQLSVDVKNLNLQEVSDEVNVRSYRAQTFTFDELAAATRKFRPDCFLGEGGFGKVYKGCIEKLNQVVAVKQLDPYGHQGIREFVVEVLTLSLADHPNLGEQRLLVYEYMPLGSLENRLHDLPRSRKALDWNTRIKIAAGAARGLEYLHDKMKPPVIYRDLKCSNILLGEDYHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLEIITGRKAIDHMKPPKEQNLVAWAKPLFKDRKRFCDMVDPLLEGRYPVRGLYQVLAIAAMCVQEQPSMRPVIADVVTALNYLESQKYDPQIHLIQSSRNGFYSSRARSQNRRPAGYGSEPRPCKVGHKLPVSDGNSSSFSETESYIKGLSSPRTRSEGHQHFDRNNDSGTDSSAD | 447 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu4g00575 | 447 | Gene3D | Phosphorylase Kinase; domain 1 | 54 | 153 | - | - | |
Vimu4g00575 | 447 | SMART | serkin_6 | 86 | 354 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vimu4g00575 | 447 | ProSiteProfiles | Protein kinase domain profile. | 86 | 354 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vimu4g00575 | 447 | Pfam | Protein tyrosine and serine/threonine kinase | 92 | 349 | IPR001245 | GO:0004672|GO:0006468 | |
Vimu4g00575 | 447 | MobiDBLite | consensus disorder prediction | 374 | 447 | - | - | |
Vimu4g00575 | 447 | ProSitePatterns | Protein kinases ATP-binding region signature. | 92 | 115 | IPR017441 | GO:0005524 | |
Vimu4g00575 | 447 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 200 | 212 | IPR008271 | GO:0004672|GO:0006468 | |
Vimu4g00575 | 447 | PANTHER | OS07G0668900 PROTEIN | 3 | 362 | - | - | |
Vimu4g00575 | 447 | FunFam | Serine/threonine-protein kinase PBS1 | 154 | 369 | - | - | |
Vimu4g00575 | 447 | Gene3D | Transferase(Phosphotransferase) domain 1 | 154 | 372 | - | - | |
Vimu4g00575 | 447 | MobiDBLite | consensus disorder prediction | 426 | 440 | - | - | |
Vimu4g00575 | 447 | SUPERFAMILY | Protein kinase-like (PK-like) | 72 | 376 | IPR011009 | - | |
Vimu4g00575 | 447 | MobiDBLite | consensus disorder prediction | 403 | 425 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu4g00575 | Vimu-Chr4 | 4186266 | 4189138 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu4g00575 | 1 | 354 | Glycoside Hydrolase | AT3G07070 | 54.821 | 6.18e-134 | 390 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_RLCK-VIIa-1 | Vimu4g00575 | PK_Tyr_Ser-Thr | 2.7e-35 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu4g00575 | - | - | gmx:100794680 | 669.077 |