Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00568 ATGTTTGAACACTCTGCCACTGCATCACCCCTTCCTTCACCTTCTTCTCTCTTCCCTCAGCTCACTCAATTCGACACCCTCTCCCACCTCAACAACTCCGACACCAGTTACTGCTACCACAACAACAGTACCAGTAACTGTAGCAGTGGCTATAGCAGTTATGGTGCCTCTCCCACTTCTGTTCCTACTCCCACCTTTATGCAGAGGAGTGTCAGTAGTAACTCCTTCAACTACACCAACAATGGCACCCACCACCCTCTTTCTGCTTTCTTCGTCGAATTGCTCGACTCCCAGCATGCTCCTGTTAGGAGAGTTTGCAGTGCTGGTGATCTCCAGGGGATTAATGGAGTTCAACACAATCACCTCTCGGATAGTCCGTTGTCAAGCGAAAGCAGTATGATTATAGAAGGTATGAACAGAGCTTGTAGATATAGCCCAGAGGAGAAGAAGGTGAGAATTGAGAGATACAGAAGCAAGAGGAACCAGAGGAATTTCAACAAGAAAATCAAGTATGCTTGCAGGAAAACATTGGCAGACAGCAGGCCACGCATCAGAGGAAGGTTTGCAAGGAATGATGAAATTGACAAGAACAGTTCAATTCAGTGGAGCCAAAGTGGAGGAGATGAAGAGGATGAAGAAGATGAGAATTGGTTCACCATCTTAGATTCCTTAGTTGCTGCAAATTTTGCCCAAGAGTCTCAAGGCAGTTGTTCCTCCTTTGGTGTATTCTATTAG 735 0.4599 MFEHSATASPLPSPSSLFPQLTQFDTLSHLNNSDTSYCYHNNSTSNCSSGYSSYGASPTSVPTPTFMQRSVSSNSFNYTNNGTHHPLSAFFVELLDSQHAPVRRVCSAGDLQGINGVQHNHLSDSPLSSESSMIIEGMNRACRYSPEEKKVRIERYRSKRNQRNFNKKIKYACRKTLADSRPRIRGRFARNDEIDKNSSIQWSQSGGDEEDEEDENWFTILDSLVAANFAQESQGSCSSFGVFY 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00568 244 ProSiteProfiles CCT domain profile. 149 191 IPR010402 GO:0005515
Vimu4g00568 244 Pfam CCT motif 151 191 IPR010402 GO:0005515
Vimu4g00568 244 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 29 219 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00568 Vimu-Chr4 4106208 4108125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00568 145 198 C2C2-CO-like Transcription Factor Family AT5G15850 46.296 2.11e-12 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu4g00568 CCT 8.7e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00568 - - gmx:102661609 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00568 4 4106208 4108125 Vimu4g00568 4 4106208 4108125 ECH
Vimu4g00568 4 4106208 4108125 Vimu5g02016 5 32087163 32089393 PCT