Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00565 ATGATTGATCGGAGAAATCTTGGTTTTTTTCTCTTTGCTTTGTCAATCTTCCCTCTTGTGTGTTTTTCTGCCACCTTTGTTCCAGTTGATAATTATCTTATAGATTGTGGAGCATCTGCAAATACTACAGTAGGTAGACGCAATTTCACAGCAGATAATTTGTTCAAGGATCTCCTTTCTACACAAGAAGATATTCTTGCCAATTCCTCCTCAAAATCAAGCACTTCTTCCTCTGATGATTGGCCTCTCTATCAAACTGCAAGAATCTTCAATGGACCCTCAAAGTACACCTTTCCAATTATGCAAAAGGGGAGACACTGGATCCGTCTGTATTTCTTTCCTTTTACTCATGAAAAGTACAATTTGGGTGCTGCAAATTTCACTGTCGCCACGCAAGACCATGTTCTTTTCAGTAGCTCCAGCATGCAGAAAGATCCTGTGATGAAGGAGTACTCTGTGAATGTAACCTCAGACAACCTCGTTATCACCTTTGCCCCTTCTGGCAATTCCACTGCCTTTGTGAATGCCATTGAAGTTGTTTCTGCCCCCGATGACCTAATTGTTGATGTTTTTTCCGTCTTAGATCAATCGTTTACCTTACCTGGGTTGGTGACTCAATCACTGGAGACAGTTTGGAGGGTTAACATGGGTGGTCCAACTGTGACCCCCGTGAATGACACCCTTCAAAGAACTTGGATTCCAGATCAAAGGTTCCTTTTGGAACCTAACCTTGCCAAATCTTTTAGTAATATTGCTGCTGTCAAGTATGAGAAAGGTGGTCCAACAACAGAAAACACCGCTCCCGCTACTGTTTACGGTACCCTCTCAGAGATGAACTCGTCCTTTGATCCCCGGAGTAATTTCAATGTGACATGGAAGTTCGATGTGAGTCCTGGATTTCAATACCTTGTTCGATTTCATTTCTGTGATGTGGTCTCTAACGGTCTCAATTCACTCTACTTCAATATTTATATTGACTCCAAGATGGCTGCTGCTGATTTTGATCTCAGTACTCATACTAATAATGCTTTGGGGGTTCCATATTATATGGATTTGGTTACACCGTTGGCTGTGAACAATATACTTCGTGTAAGTATTGGTCCTTCTGGTTTAAGTAAGGATTACCCGAATGCAATTTTGAATGGGCTGGAGATCATGAAAATGAACAATTCAATGGGCAGTCTCATCACAGGAACAGTACCTACAGCTATTGGTGCAGGTTCAAGTTCTAAGAGTATTGGCATGATTGTGGGTGTGGTTGTTGGTGTAGTTGGTGCAGTTGTCTTGGCTGTACTTATCTTTGTATTATGCATGAGGAGACGAAAGTTGGCACGGCAAAGGCAGTCAAAGACATGGGTTCCTTTATCCATCAATGATGGAACTACTTCTCATACCATGGGAAGTAAATATTCTAATGGCACGACACTAAGTGTTGCTTCAAACCATGAGTACCGAGTGCCTCTTGTTGCAGTTCAGGAGGCTACAAACAACTTTGATGAGAGTTGGGTTATTGGGATAGGTGGCTTTGGTAAAGTGTACAAAGGAGAGTTAAGTGATGGCACAAAAGTGGCAGTTAAGAGGGGAAATCCACGGTCCCAGCAGGGGCTTGCAGAGTTCCAAACAGAAATTGTAATGCTGTCTCAGTTCCGCCATCGCCATCTGGTGTCTTTGATTGGTTATTGTGATGAAAAGAATGAAATGATCTTGATATATGAGTATATGGAGAAAGGAACTCTCAAGAGTCATTTATATGGCTCAGATCTGCCTAGCTTAAGCTGGAAGGAGAGGCTTGAGATATGCATTGGATCAGCCAGAGGACTTCATTATCTTCACACTGGCTATGCTAAAGCTGTTATTCACCGTGATGTGAAGTCTGCAAATATCCTTCTTGATGAGAAACTAATGGCTAAAGTCGCTGATTTTGGACTGTCAAAGACGGGGCCTGAAATTGACCAGACACATGTGAGCACAGCTGTGAAAGGTAGTTTTGGGTACCTGGATCCCGAGTATTTCAGGAGGCAACAACTGACAGAAAAGTCAGATGTGTATTCATTTGGGGTAGTTCTGTTTGAAGTTCTTTGTGCAAGACCTGTCATAGATCCAACACTTCCTAGGGAAATGGTAAACTTGGCAGAATGGGCAATGAAATGGCAGAAGAAGGGGCAGTTGGAGCAGATCATAGATGAAAGACTTGCAGGAAAAATCAGACCAGAATCTCTTAGGAAGTTTGGAGAAACTGCTGAGAAATGCCTGGCTGATTATGGTGTTGACAGACCTTCTATGGGAGATGTCTTGTGGAATTTGGAGTATGCTCTCCAACTTCAAGAGGCTGTGGTTCAAGGTGATCCTGAAGAAAACAGCACCAATATGATTGGTGAACTCTCTCCACAGGTCAATAATATCAGCCAGGATGCAAGTGCTTCTACTACACAATTTGAAGGCACAAGTCTTGATGATCTCTCAGGTGTTTCTATGAGTAGGGTCTTCTCACAATTGGTGAAGTCTGAGGGTAGATAG 2517 0.4255 MIDRRNLGFFLFALSIFPLVCFSATFVPVDNYLIDCGASANTTVGRRNFTADNLFKDLLSTQEDILANSSSKSSTSSSDDWPLYQTARIFNGPSKYTFPIMQKGRHWIRLYFFPFTHEKYNLGAANFTVATQDHVLFSSSSMQKDPVMKEYSVNVTSDNLVITFAPSGNSTAFVNAIEVVSAPDDLIVDVFSVLDQSFTLPGLVTQSLETVWRVNMGGPTVTPVNDTLQRTWIPDQRFLLEPNLAKSFSNIAAVKYEKGGPTTENTAPATVYGTLSEMNSSFDPRSNFNVTWKFDVSPGFQYLVRFHFCDVVSNGLNSLYFNIYIDSKMAAADFDLSTHTNNALGVPYYMDLVTPLAVNNILRVSIGPSGLSKDYPNAILNGLEIMKMNNSMGSLITGTVPTAIGAGSSSKSIGMIVGVVVGVVGAVVLAVLIFVLCMRRRKLARQRQSKTWVPLSINDGTTSHTMGSKYSNGTTLSVASNHEYRVPLVAVQEATNNFDESWVIGIGGFGKVYKGELSDGTKVAVKRGNPRSQQGLAEFQTEIVMLSQFRHRHLVSLIGYCDEKNEMILIYEYMEKGTLKSHLYGSDLPSLSWKERLEICIGSARGLHYLHTGYAKAVIHRDVKSANILLDEKLMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPTLPREMVNLAEWAMKWQKKGQLEQIIDERLAGKIRPESLRKFGETAEKCLADYGVDRPSMGDVLWNLEYALQLQEAVVQGDPEENSTNMIGELSPQVNNISQDASASTTQFEGTSLDDLSGVSMSRVFSQLVKSEGR 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00565 838 Gene3D - 31 183 - -
Vimu4g00565 838 Gene3D - 206 390 - -
Vimu4g00565 838 SUPERFAMILY Protein kinase-like (PK-like) 474 769 IPR011009 -
Vimu4g00565 838 ProSitePatterns Protein kinases ATP-binding region signature. 504 526 IPR017441 GO:0005524
Vimu4g00565 838 FunFam Putative receptor-like protein kinase 31 183 - -
Vimu4g00565 838 Gene3D Phosphorylase Kinase; domain 1 459 573 - -
Vimu4g00565 838 FunFam Receptor-like protein kinase FERONIA 207 390 - -
Vimu4g00565 838 Pfam Protein tyrosine and serine/threonine kinase 503 714 IPR001245 GO:0004672|GO:0006468
Vimu4g00565 838 SMART serkin_6 498 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00565 838 FunFam receptor-like protein kinase FERONIA 462 573 - -
Vimu4g00565 838 FunFam Receptor-like protein kinase FERONIA 574 789 - -
Vimu4g00565 838 ProSiteProfiles Protein kinase domain profile. 498 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00565 838 CDD STKc_IRAK 504 769 - -
Vimu4g00565 838 ProSitePatterns Serine/Threonine protein kinases active-site signature. 618 630 IPR008271 GO:0004672|GO:0006468
Vimu4g00565 838 PANTHER OS07G0166700 PROTEIN 485 775 IPR045272 GO:0004714|GO:0006468
Vimu4g00565 838 Pfam Malectin-like domain 34 388 IPR024788 -
Vimu4g00565 838 Gene3D Transferase(Phosphotransferase) domain 1 574 791 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00565 Vimu-Chr4 4087078 4089594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00565 10 838 Receptor kinase-like Gene Family AT3G46290 65.513 0.0 1082
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vimu4g00565 Malectin_like 7.1e-37 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00565 - - gmx:100305416 1367.83