Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00560 ATGCCGAAAATGGGACTCAAAAGCTTATTCCTCTTTAAAACATCACCATCACCATCTTCTGCAAAGCCCTTCTCCCACTCGTTATTGGACGAAAACATTGAAATTGCACGCTCTATCATTTCCAAATGGGACCTTATTCCTTCTTCTCACCAAACTTCTTCTATCAAACCTGCAACCGTTCCTCTTTTCAGCAACACGCGTCAGGAAGCCAAACAGTACCTTAAGGCCGTTACGAGTCTGCAGTCCACTATGCATCACCTCGTCGCACTCGATTCCTCCTCCGAGAGCCTCGTTCAAGCCCAATTCCTAATGCAACTCGCCATGAAGAGGCTCCAAACCGAATTCTATCGGATTTTAGCCGAAAACAAGGACAATCTCGATCCTGAATCCGTCATTTCTACCGATCGACGGAGCAGCAGTGTCTCCGAGGACGAAGACAATTTTTCAGAGGACGAGTACCGCTTCGCCGGCGGCTCGGTATCCACTGTCGCCATGGCGGATTTGAAAGCCATTGCGGAGTGTATGGTTTCCGCGGGATACAGCAAAGAGTGCGTCAAGATTTATATCATAATGAGGAAATCGATCCTGGATGAGGCGCTGTATCATTTAGGAGTGGAGAGGCTGAGTTTTTCTCAGGTTCAGAAGATGGACTGGGGGGTTCTGGAGTCTAAGATTAAGTGCTGGGTGAACTCCGTCCAGGTTGCCGTACAAACTCTGTTTCGCGGCGAGAAATCGCTCTGCGACTACGTCTTCGGTTCGGCGGAGAGGAAGATCGCGGACTCGTGTTTTGCCGCGATTTGCGGAGATGGCGCGGCGACGCTGTTCGGCTTTCCAGATAACGTGGCGAAGTGCAAGAAAACGACAGAGAAAATGTTCAGGATGCTGGACTTGTACAACGCGATCTGTGAAAACCAGCAACAAATCGAGTCCATCTTCTCGTCCGAATCAACCTCCTCCATCATATTACAGGTGTGCGCTTCAAAGGCGAGGCTTGGCGAGGCCATTCGGACGATGTTAATCAACTTTGAATCCGCGATTCACAAGGAATCTTCGAAGATTCCAGTGCCTGGAGGTGGAATCCACCCGGTCACGCGCTACGTCATGAATTACATCGCGTTCCTCGCCGATTACAAGGACGCGCTCTCCGAGATAGTTGCCGATTGGCCGCAGAATCCGTTGCCGGAGTCTTACTACCGCAGTTGCGATCGCGAGGGAGTGAATCGCTCGTCGGGGATAGCGGAACGGATCGCGTGGCTAATATTGGGGCTCCTCTGCAAACTCGACGCCAAAGCGGAACTGTACAGAGAGGTTGCACTCTCCTACCTGTTTCTCGCAAACAACATGCAATACGTCGTCGTAAAAGTGCGAACATCAAACCTAGGTTTAATCCTCGGCGATCATTGGTTAACGAAACACGAGCTGAGGGTGAAAGAGTACGTTTCCAAGTACGAGGGCGTTGGGTGGAGCAAGGTTTTATCGACTCCACCGGAAAACCCAACGGCGGAACAAGCGAGGGCAATTCTCGAGAGTTTCATGTTCGCATTCCGTGAAGCGTGCAGGGCACAATCCTCGTGGGTCGTGCCCGACCCGAATCTGCGTGACGAAATAAAAGCATCGATAGCTACTAAGTTTGAACCAATATACAAAGTGTTTTTTGAGAAATATCAGCTCGGGCCGGATGCGGTTTTCGGTTGTTCGCCCAATTATTTCGAAAAAAGTATCTCAGATATTTTAACGGGTTGCGTTTCGTCGTCGCAGACAGCTCCTTCTCCACCGCATCGCTTGAAACGCCGGTGA 1797 0.5042 MPKMGLKSLFLFKTSPSPSSAKPFSHSLLDENIEIARSIISKWDLIPSSHQTSSIKPATVPLFSNTRQEAKQYLKAVTSLQSTMHHLVALDSSSESLVQAQFLMQLAMKRLQTEFYRILAENKDNLDPESVISTDRRSSSVSEDEDNFSEDEYRFAGGSVSTVAMADLKAIAECMVSAGYSKECVKIYIIMRKSILDEALYHLGVERLSFSQVQKMDWGVLESKIKCWVNSVQVAVQTLFRGEKSLCDYVFGSAERKIADSCFAAICGDGAATLFGFPDNVAKCKKTTEKMFRMLDLYNAICENQQQIESIFSSESTSSIILQVCASKARLGEAIRTMLINFESAIHKESSKIPVPGGGIHPVTRYVMNYIAFLADYKDALSEIVADWPQNPLPESYYRSCDREGVNRSSGIAERIAWLILGLLCKLDAKAELYREVALSYLFLANNMQYVVVKVRTSNLGLILGDHWLTKHELRVKEYVSKYEGVGWSKVLSTPPENPTAEQARAILESFMFAFREACRAQSSWVVPDPNLRDEIKASIATKFEPIYKVFFEKYQLGPDAVFGCSPNYFEKSISDILTGCVSSSQTAPSPPHRLKRR 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00560 598 Pfam Exo70 exocyst complex subunit 227 575 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vimu4g00560 598 PANTHER EXOCYST COMPLEX PROTEIN EXO70 22 561 IPR004140 GO:0000145|GO:0006887
Vimu4g00560 598 Gene3D Exocyst complex component Exo70 51 586 - -
Vimu4g00560 598 SUPERFAMILY Cullin repeat-like 59 571 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00560 Vimu-Chr4 4040773 4042569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00560 11 580 EXO70 exocyst subunit family AT5G59730 45.470 2.39e-166 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00560 K07195 - gmx:100801773 869.381