LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu4g00560	ATGCCGAAAATGGGACTCAAAAGCTTATTCCTCTTTAAAACATCACCATCACCATCTTCTGCAAAGCCCTTCTCCCACTCGTTATTGGACGAAAACATTGAAATTGCACGCTCTATCATTTCCAAATGGGACCTTATTCCTTCTTCTCACCAAACTTCTTCTATCAAACCTGCAACCGTTCCTCTTTTCAGCAACACGCGTCAGGAAGCCAAACAGTACCTTAAGGCCGTTACGAGTCTGCAGTCCACTATGCATCACCTCGTCGCACTCGATTCCTCCTCCGAGAGCCTCGTTCAAGCCCAATTCCTAATGCAACTCGCCATGAAGAGGCTCCAAACCGAATTCTATCGGATTTTAGCCGAAAACAAGGACAATCTCGATCCTGAATCCGTCATTTCTACCGATCGACGGAGCAGCAGTGTCTCCGAGGACGAAGACAATTTTTCAGAGGACGAGTACCGCTTCGCCGGCGGCTCGGTATCCACTGTCGCCATGGCGGATTTGAAAGCCATTGCGGAGTGTATGGTTTCCGCGGGATACAGCAAAGAGTGCGTCAAGATTTATATCATAATGAGGAAATCGATCCTGGATGAGGCGCTGTATCATTTAGGAGTGGAGAGGCTGAGTTTTTCTCAGGTTCAGAAGATGGACTGGGGGGTTCTGGAGTCTAAGATTAAGTGCTGGGTGAACTCCGTCCAGGTTGCCGTACAAACTCTGTTTCGCGGCGAGAAATCGCTCTGCGACTACGTCTTCGGTTCGGCGGAGAGGAAGATCGCGGACTCGTGTTTTGCCGCGATTTGCGGAGATGGCGCGGCGACGCTGTTCGGCTTTCCAGATAACGTGGCGAAGTGCAAGAAAACGACAGAGAAAATGTTCAGGATGCTGGACTTGTACAACGCGATCTGTGAAAACCAGCAACAAATCGAGTCCATCTTCTCGTCCGAATCAACCTCCTCCATCATATTACAGGTGTGCGCTTCAAAGGCGAGGCTTGGCGAGGCCATTCGGACGATGTTAATCAACTTTGAATCCGCGATTCACAAGGAATCTTCGAAGATTCCAGTGCCTGGAGGTGGAATCCACCCGGTCACGCGCTACGTCATGAATTACATCGCGTTCCTCGCCGATTACAAGGACGCGCTCTCCGAGATAGTTGCCGATTGGCCGCAGAATCCGTTGCCGGAGTCTTACTACCGCAGTTGCGATCGCGAGGGAGTGAATCGCTCGTCGGGGATAGCGGAACGGATCGCGTGGCTAATATTGGGGCTCCTCTGCAAACTCGACGCCAAAGCGGAACTGTACAGAGAGGTTGCACTCTCCTACCTGTTTCTCGCAAACAACATGCAATACGTCGTCGTAAAAGTGCGAACATCAAACCTAGGTTTAATCCTCGGCGATCATTGGTTAACGAAACACGAGCTGAGGGTGAAAGAGTACGTTTCCAAGTACGAGGGCGTTGGGTGGAGCAAGGTTTTATCGACTCCACCGGAAAACCCAACGGCGGAACAAGCGAGGGCAATTCTCGAGAGTTTCATGTTCGCATTCCGTGAAGCGTGCAGGGCACAATCCTCGTGGGTCGTGCCCGACCCGAATCTGCGTGACGAAATAAAAGCATCGATAGCTACTAAGTTTGAACCAATATACAAAGTGTTTTTTGAGAAATATCAGCTCGGGCCGGATGCGGTTTTCGGTTGTTCGCCCAATTATTTCGAAAAAAGTATCTCAGATATTTTAACGGGTTGCGTTTCGTCGTCGCAGACAGCTCCTTCTCCACCGCATCGCTTGAAACGCCGGTGA	1797	0.5042	MPKMGLKSLFLFKTSPSPSSAKPFSHSLLDENIEIARSIISKWDLIPSSHQTSSIKPATVPLFSNTRQEAKQYLKAVTSLQSTMHHLVALDSSSESLVQAQFLMQLAMKRLQTEFYRILAENKDNLDPESVISTDRRSSSVSEDEDNFSEDEYRFAGGSVSTVAMADLKAIAECMVSAGYSKECVKIYIIMRKSILDEALYHLGVERLSFSQVQKMDWGVLESKIKCWVNSVQVAVQTLFRGEKSLCDYVFGSAERKIADSCFAAICGDGAATLFGFPDNVAKCKKTTEKMFRMLDLYNAICENQQQIESIFSSESTSSIILQVCASKARLGEAIRTMLINFESAIHKESSKIPVPGGGIHPVTRYVMNYIAFLADYKDALSEIVADWPQNPLPESYYRSCDREGVNRSSGIAERIAWLILGLLCKLDAKAELYREVALSYLFLANNMQYVVVKVRTSNLGLILGDHWLTKHELRVKEYVSKYEGVGWSKVLSTPPENPTAEQARAILESFMFAFREACRAQSSWVVPDPNLRDEIKASIATKFEPIYKVFFEKYQLGPDAVFGCSPNYFEKSISDILTGCVSSSQTAPSPPHRLKRR	598

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu4g00560	598	Pfam	Exo70 exocyst complex subunit	227	575	IPR046364	GO:0000145\|GO:0005546\|GO:0006887
	Vimu4g00560	598	PANTHER	EXOCYST COMPLEX PROTEIN EXO70	22	561	IPR004140	GO:0000145\|GO:0006887
	Vimu4g00560	598	Gene3D	Exocyst complex component Exo70	51	586	-	-
	Vimu4g00560	598	SUPERFAMILY	Cullin repeat-like	59	571	IPR016159	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu4g00560	Vimu-Chr4	4040773	4042569	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu4g00560	11	580	EXO70 exocyst subunit family	AT5G59730	45.470	2.39e-166	486

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu4g00560	K07195		-	gmx:100801773	869.381

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