Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00559 TTGTGCAATGCAAAAGCGAGAATCAAGGTGTACGAGCTGAGGAACAAAACAAAAGCAGAGCTTCTGAACCAATTGAAGGATCTCAAAGCTGAACTCGCTCTCCTCCGCGTCGCTAAGGTCACCGGCGGGGCCCCTAACAAGCTTTCCAAAATCAAAGTGGTTCGGCTTTCGATAGCGCAGGTGCTGACGGTGATTTCCCAGAAGCAAAAGGCAGCGTTGAGAGAGGCTTACAAGAACAAGAAGTACCTTCCTTTGGACCTGCGCCCCAAGAAGACCAGGGCTATTAGAAGGCGATTAACAAAACATCAGGCTTCATTGAAGACAGAGCGTGAGAAGAAGAAGGAATTATATTTTCCGATGCGAAAGTATGCTATTAAGGTGTAA 384 0.4714 MCNAKARIKVYELRNKTKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKYLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKELYFPMRKYAIKV 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00559 127 NCBIfam 50S ribosomal protein L29 12 68 IPR001854 GO:0003735|GO:0005840|GO:0006412
Vimu4g00559 127 FunFam 60S ribosomal protein L35 82 127 - -
Vimu4g00559 127 Gene3D - 5 81 IPR036049 GO:0003735|GO:0005840|GO:0006412
Vimu4g00559 127 Coils Coil 11 38 - -
Vimu4g00559 127 Gene3D - 82 127 - -
Vimu4g00559 127 PANTHER 60S RIBOSOMAL PROTEIN L35 6 127 IPR045059 GO:0000463|GO:0022625
Vimu4g00559 127 Pfam Ribosomal L29 protein 12 68 IPR001854 GO:0003735|GO:0005840|GO:0006412
Vimu4g00559 127 Hamap 50S ribosomal protein L29 [rpmC]. 8 68 IPR001854 GO:0003735|GO:0005840|GO:0006412
Vimu4g00559 127 CDD Ribosomal_L29_HIP 12 68 - -
Vimu4g00559 127 FunFam 60S ribosomal protein L35 5 81 - -
Vimu4g00559 127 SUPERFAMILY Ribosomal protein L29 (L29p) 8 69 IPR036049 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00559 Vimu-Chr4 4026856 4028653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00559 6 127 Cytoplasmic Ribosomal Protein Gene Family AT2G39390 89.344 1.03e-72 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00559 K02918 - gmx:100789845 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00559 4 4026856 4028653 Vimu4g00559 4 4026856 4028653 ECH